Job Description P0A7L0 Confidence 100.00% Date Thu Jan 5 11:05:50 GMT 2012 Rank 11 Aligned Residues 185 % Identity 20% Template c2ftcA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:mitochondrial ribosomal protein l1; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Resolution 12.10 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.										.
Query SS confidence																																		.										.
Query Sequence		V	D	V	A	V	N	L	G	I	D	A	R	K	S	D	Q	N	V	R	G	A	T	V	L	P	H	G	T	G	R	S	V	.	R	V	A	V	F	T	Q	G	A	.	N	A	E	A	A	K	A	A	G	A	E	L	V	G	M	E	D	L	A	D	Q	I	K	K	G	E	M	N	F	D	V	V	I	A	S	P	D
Query Conservation																																		.										.
Alig confidence																																		.										.
Template Conservation
Template Sequence		L	D	L	T	L	D	M	A	L	G	K	K	K	N	V	E	P	F	T	S	V	L	S	L	P	Y	P	F	A	S	E	I	N	K	V	A	V	F	T	E	N	A	S	E	V	K	I	A	E	E	N	G	A	A	F	A	G	G	T	S	L	I	Q	K	I	W	D	D	E	I	V	A	D	F	Y	V	A	V	P	E
Template Known Secondary structure									S	S		T	T		T	T				B						S	S			S	S	S	S									S	S									S			S	B			S	T	T	S	S	S	S	S	S	S	S					S				B		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		A	M	R	V	V	G	Q	L	G	Q	V	L	G	P	R	G	L	M	P	N	P	K	V	G	T	V	T	P	N	V	A	E	A	V	K	N	A	K	A	G	.	Q	V	R	Y	R	N	D	K	N	G	I	I	H	T	T	I	G	K	V	D	F	D	A	D	K	L	K	E	N	L	E	A	L	L	V	A	L	K	K
Query Conservation																																										.
Alig confidence																	.	.																								.
Template Conservation																	.	.
Template Sequence		I	M	P	E	L	N	R	L	R	K	K	L	N	K	K	.	.	Y	P	K	L	S	R	N	S	I	G	R	D	I	P	K	M	L	E	L	F	K	N	G	H	E	I	K	V	D	E	E	R	E	N	F	L	Q	T	K	I	A	T	L	D	M	S	S	D	Q	I	A	A	N	L	Q	A	V	I	N	E	V	C	R
Template Known Secondary structure		T	T	T	T	S	T	T		T	T	T	T	T	S	S	.	.					T	T	T	T	B	S	S			T	T	T	T	T	S			S	S		S				B			S	S	S									S	S			S					T											T
Template Predicted Secondary structure																	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	P	T	Q	A	K	G	V	Y	I	K	K	V	S	I	S	T	T	M	G	A	G	V	A	V	D	Q	A	G	L
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		H	R	P	L	N	L	.	G	P	F	V	V	R	A	F	L	R	S	S	T	S	E	G	L	L	L	K	I	D	P	L
Template Known Secondary structure					S			.		S		S						B				S	S	S			B				S
Template Predicted Secondary structure								.
Template SS confidence
		159	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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