Job Description P0A7L0 Confidence 100.00% Date Thu Jan 5 11:05:50 GMT 2012 Rank 9 Aligned Residues 205 % Identity 18% Template c1s1iA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Resolution 11.70 Å

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		15	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		V	D	A	T	K	Q	Y	D	I	N	E	A	.	I	A	L	L	K	E	L	A	T	A	K	F	V	E	S	V	D	V	A	V	N	L	G	I	D	A	R	K	S	D	Q	N	V	R	G	A	T	V	L	P	H	G	T	G	R	S	V	R	V	A	V	F	T	Q	G	A	N	A	E	A	A	K	A	A	G	A	E
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		I	T	S	S	Q	V	R	E	H	V	K	E	L	L	K	Y	S	N	E	T	K	K	R	N	F	L	E	T	V	E	L	Q	V	G	L	K	N	Y	D	P	Q	R	D	K	R	F	S	G	S	L	K	L	P	N	C	P	R	P	N	M	S	I	C	I	F	G	D	A	F	D	V	D	R	A	K	S	C	G	V	D
Template Known Secondary structure																				S	S	S	S		S	S												S			T	T	S	T	T								B	T	T			S	S										T	T									T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		94	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																								.
Query SS confidence												.	.	.	.	.	.																								.
Query Sequence		L	V	G	M	E	D	L	A	D	Q	.	.	.	.	.	.	I	K	K	G	E	M	N	F	D	V	V	I	A	S	P	D	A	M	R	V	V	G	Q	.	L	G	Q	V	L	G	P	R	G	L	M	P	N	P	K	V	G	T	V	T	P	N	V	A	E	A	V	K	N	A	K	A	G	Q	V	R	Y	R	N	D
Query Conservation												.	.	.	.	.	.																								.
Alig confidence												.	.	.	.	.	.																								.															.	.																	.
Template Conservation																																																								.	.																	.
Template Sequence		A	M	S	V	D	D	L	K	K	L	N	K	N	K	K	L	I	K	K	L	S	K	K	Y	N	A	F	I	A	S	E	V	L	I	K	Q	V	P	R	L	L	G	P	Q	L	S	K	A	G	K	F	P	T	P	.	.	V	S	H	N	D	D	L	Y	G	K	V	T	D	V	R	S	.	T	I	K	F	Q	L	K
Template Known Secondary structure					T	T																				S						G	G	G	G	T						T								T						.	.			T	T												T	.							T
Template Predicted Secondary structure																																																								.	.																	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	G	I	I	H	T	T	I	G	K	V	D	F	D	A	D	K	L	K	E	N	L	E	A	L	L	V	A	L	K	K	A	K	P	T	Q	A	K	G	V	Y	I	K	K	V	S	I	S	T	T	M	G	A	G	V	A	V
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		K	V	L	C	L	A	V	A	V	G	N	V	E	M	E	E	D	V	L	V	N	Q	I	L	M	S	V	N	F	F	V	S	L	L	K	K	N	W	.	.	Q	N	V	G	S	L	V	V	K	S	S	M	G	P	A	F	R	L
Template Known Secondary structure		T	S	S									S	S	S																				S	S	S	G	G	.	.	G	G									S	S	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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