Job Description P06611 Confidence 97.65% Date Thu Jan 5 10:59:11 GMT 2012 Rank 112 Aligned Residues 125 % Identity 17% Template c2ja1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. Resolution 2.8 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		R	A	G	E	I	L	H	L	V	G	P	N	G	A	G	K	S	T	L	L	A	R	M	A	G	M	T	S	G	K	G	S	I	Q	F	A	G	Q	P	L	E	A	.	.	W	S	A	T	K	L	A	L	H	R	A	Y	L	S	Q	Q	Q	T	P	P	F	A	T	P	V	W	H	Y	L	T	L	H	Q	H	D	K
Query Conservation																																												.	.
Alig confidence																																												.	.																													.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		Q	N	G	W	I	E	V	I	C	G	S	M	F	S	G	K	S	E	E	L	I	R	R	V	R	R	T	Q	F	A	K	Q	H	A	I	V	F	K	P	C	I	D	N	R	Y	S	E	E	D	V	V	S	H	N	G	L	K	V	K	A	V	P	V	S	A	S	K	D	I	F	E	H	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	T	T	S	S															T	T									T	T			S	S		S	S					T	T	S									S	S	G	G	G	G	G	G	G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	T	E	L	L	N	D	V	A	G	A	L	A	L	D	D	K	L	G	R	S	T	N	Q	L	S	G	G	E	W	Q	R	V	R	L	A	A	V	V	L	Q	I	T	P	Q	A	N	P	A	G	Q	L	L	L	L	D	E	P	M	N	S	L	D	V	A	Q	Q	S	A	L	D	K	I	L	S	A	L	C	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	E	E	L	D	V	I	A	I	D	E	V	.	Q	F	F	D	G	D	.	.	.	.	I	V	E	V	V	Q	V	L	A	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S							S	S	G	.	G	G	S		T	T	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.							.	.	.	.
Template SS confidence
																																																78	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190											.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	L	A	I	V	M	S	S	.	.	.	.	.	.	.	.	.	.	H	D	L	N	H	T	L	R	H	A	H	R	A	W	L	L	K
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	Y	R	V	I	V	A	G	L	D	Q	D	F	R	G	L	P	F	G	Q	V	P	Q	L	M	A	I	A	E	H	V	T	K	L	Q
Template Known Secondary structure		T	T									S	B		T	T	S		B		S	S									S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions