Return to main results Retrieve Phyre Job Id

Job DescriptionP45848
Confidence22.88%DateThu Jan 5 12:03:51 GMT 2012
Rank11Aligned Residues96
% Identity10%Templated2fbha1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   284.....290.........300.........310.........320.........330.........340.........350.........360...
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  PPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKGDKV
Query Conservation 

  


 
  
     
     






 

 
 
                        
   

 
   

     
Alig confidence 












..




























































....
Template Conservation      
  


  
..      

  
  
   
 
 
     
 
   
 

  
                     ....
Template Sequence  RDSPTQRELAQSV. . GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTG. . . .
Template Known Secondary structure  SS

B..T

TTS

BTTB
S

TTTTT....
Template Predicted Secondary structure 




..




















....
Template SS confidence 















































































   48.50.........60 .........70.........80.........90.........100.........110.........120.
 
   364.....370.........380......
Predicted Secondary structure 



Query SS confidence 






















Query Sequence  VLTGRRNRVLRRAFLRMQKFYLP
Query Conservation   
          
       
  
Alig confidence  .





















Template Conservation  .
  

   
   
  
   

 
Template Sequence  . IDESEQALCQQVLLRILANLEN
Template Known Secondary structure  .

T
Template Predicted Secondary structure  .


Template SS confidence 






















   122.......130.........140...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions