Return to main results Retrieve Phyre Job Id

Job DescriptionP45848
Confidence17.91%DateThu Jan 5 12:03:51 GMT 2012
Rank16Aligned Residues97
% Identity9%Templated2a61a1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   285....290.........300.........310.........320.........330.........340.........350.........360....
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  PDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKGDKVV
Query Conservation 
  


 
  
     
     






 

 
 
                        
   

 
   

     
 
Alig confidence 











..




























































.....
Template Conservation     
  


  
..      

  
  
   


 
     
 
   
 

  
                     .....
Template Sequence  GPKRPGELSVLL. . GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSD. . . . .
Template Known Secondary structure 

B
..T

TTSTT
.....
Template Predicted Secondary structure 



..













.....
Template SS confidence 















































































   47..50........ .60.........70.........80.........90.........100.........110.........
 
   365....370.........380........
Predicted Secondary structure 



Query SS confidence 























Query Sequence  LTGRRNRVLRRAFLRMQKFYLPRK
Query Conservation 
          
       
    
Alig confidence 























Template Conservation 
   
       
  
   

   
Template Sequence  LGKEKSSKILDYLKELKGVMERNF
Template Known Secondary structure 

Template Predicted Secondary structure 



Template SS confidence 























   120.........130.........140...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions