Job Description P45848 Confidence 4.73% Date Thu Jan 5 12:03:51 GMT 2012 Rank 70 Aligned Residues 168 % Identity 11% Template c2xdtA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the soluble domain of human2 endoplasmic reticulum aminopeptidase 1 erap1 Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		36	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		S	L	F	D	V	E	A	T	L	Q	.	P	D	G	V	L	D	I	K	E	N	I	H	F	Q	A	R	N	Q	Q	I	K	H	G	F	Y	R	D	L	P	R	L	W	M	Q	P	D	G	D	A	A	L	L	N	Y	H	I	V	G	V	T	R	D	G	I	P	E	P	W	H	L	D	W	H	I	G	L	M	S	I
Query Conservation												.
Alig confidence												.																			.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	Y	D	L	L	I	H	A	N	L	T	T	L	T	F	W	G	T	T	K	V	E	I	T	A	S	Q	P	.	.	T	S	T	I	I	L	H	S	.	.	.	.	.	.	.	.	.	.	.	H	H	L	Q	I	S	R	A	T	L	R	K	G	L	S	E	E	P	L	Q	V	L	E	H	P	R	Q	E	Q	I
Template Known Secondary structure												T	T	T	T													S	S		.	.									.	.	.	.	.	.	.	.	.	.	.	S	S																							T	T	T	T
Template Predicted Secondary structure																															.	.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.												.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.												.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	G	D	K	Q	R	F	L	P	Q	G	D	Y	H	Y	Q	I	H	Y	Q	V	K	N	.	.	.	.	.	.	.	.	A	F	L	R	E	G	D	S	D	L	L	I	W	N	V	.	.	.	.	.	.	.	.	.	.	.	T	G	N	H	W	P	F	E	I	Y	K	T	R	F	S	L	Q	F	S	N	I	A
Query Conservation																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		A	L	L	A	P	E	P	L	L	V	G	L	P	Y	T	V	V	I	H	Y	A	G	N	L	S	E	T	F	H	G	F	Y	K	S	T	Y	R	T	K	E	G	E	L	R	I	L	A	S	T	Q	F	E	P	T	A	A	R	M	A	F	P	C	F	D	E	P	A	F	K	A	S	F	S	I	K	I	.	.	.	.
Template Known Secondary structure											T	T														B	S	S	S	S										T	T	S											T	T	T	T					S		B			S	T	T	S		B							.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	P	F	S	E	I	D	L	F	T	G	E	E	G	D	T	Y	R	N	G	R	I	L	E	D	G	R	I	E	S	R	D	P	F	Y	R	E	D	F	T	V	L	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	E	P	R	H	L	A	I	S	N	M	P	L	V	K	S	V	T	V	A	E	G	L	I	E	D	H	F	D	V	T	V	K	M	S	T	Y	L	V	A	F	I	I	S
Template Known Secondary structure					T	T						S	S										T	T											S	B		G	G	G
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions