Return to main results Retrieve Phyre Job Id

Job DescriptionP0AG40
Confidence100.00%DateThu Jan 5 11:28:03 GMT 2012
Rank2Aligned Residues287
% Identity31%Templatec3op1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
Resolution2.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70. ........80.
Predicted Secondary structure 





























..


Query SS confidence 



































































. .









Query Sequence  IRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATDKAPAR. . LTRLREKLRY
Query Conservation 
              




 




 


 

  
   
       




  

   
        ..
   
 
   
Alig confidence 









..























































..









Template Conservation 
     
   ..  





 




 


 

  
   
        
 

 
 
   
          
 
  

   
Template Sequence  IKNQKDIGTP. . SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVXTFNESPKIALEPYHPDLFLHILNPAERERK
Template Known Secondary structure 
SSGGG



..S
S

SS

SSTT


SS
TS


GGGG
BSS
Template Predicted Secondary structure 






..



























Template SS confidence 















































































   7..10...... ...20.........30.........40.........50.........60.........70.........80....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  LAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGG
Query Conservation 
   


 
    
      
  
 

  

   
    



 

 

    
    
       
  
 

      
Alig confidence 




























.































....













Template Conservation 
   


 
 
  
    
 

 
 

  .

  
    



 

 

    
   

   ....
  
 

       
Template Sequence  LKREGVEELYLLDFSSQFASLTAQEFFAT. YIKAXNAKIIVAGFDYTFGSDKKTAEDLKNYF. . . . DGEVIIVPPVEDEK
Template Known Secondary structure  T




T

.TTT

BTTTTB
STT
....SS


B
SS
Template Predicted Secondary structure 








.















....



Template SS confidence 















































































   85....90.........100.........110... ......120.........130.........140..... ....150.........
 
   162.......170.........180.........190.........200.........210..... ....220.........230.........240
Predicted Secondary structure 


















.










Query SS confidence 





















































.
























Query Sequence  VRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLR. RQVSPVKGVYAVEVLGLGEKPLPGV
Query Conservation    



 

  
  
 
  

 


  
 
 
 
  
   

 







   .    
  


   
       
  
Alig confidence 





































......









.

















.





Template Conservation    



 

  
  


  
  



 
 
 
 
  
 ......






        
  


   
 
  .  
  
Template Sequence  GKISSTRIRQAILDGNVKEAGKLLGAPLPSRGXVVHGN. . . . . . GYPTANLVLLDRTYXPADGVYVVDVEIQR. QKYRAX
Template Known Secondary structure 
B

T
SS




......




SSB



STT.
Template Predicted Secondary structure 








......















.
Template SS confidence 















































































   160.........170.........180.........190....... ..200.........210.........220...... ...230..
 
   241........250.........260.........270.........280.........290.........300......
Predicted Secondary structure 



























Query SS confidence 

































































Query Sequence  ANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIARDELTAREF
Query Conservation   


  

       

 

 

  



  
 
 
   

 
 

     
  

  
   
   
Alig confidence 










..




















































Template Conservation   


  

   ..  

  
 

  



  
 
 
   

 
 

 
   
  

  
   

 
Template Sequence  ASVGKNVTFDE. . ARFEVNIFDFNQDIYGETVXVYWLDRIRDXTKFDSVDQLVDQLKADEEVTRNW
Template Known Secondary structure 
BTTTB

..
TT




TT





SS
Template Predicted Secondary structure 







..



















Template SS confidence 

































































   239240......... 250.........260.........270.........280.........290.........300..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions