Job Description P0AG40 Confidence 99.80% Date Thu Jan 5 11:28:03 GMT 2012 Rank 10 Aligned Residues 121 % Identity 19% Template c3glvB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein; PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1 Resolution 1.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	C	V	L	T	I	G	N	F	D	G	V	H	R	G	H	R	A	L	L	Q	G	L	Q	E	E	G	R	K	R	N	L	P	V	M	V	M	L	F	E	P	Q	P	L	E	L	F	A	T	D	K	A	P	A	R	L	T	R	L	R	E	K	L	R	Y	L	A	E	C	G	V	D	Y	V	L	C	V	R	F
Query Conservation
Alig confidence																																	.	.	.												.	.	.	.	.
Template Conservation																																	.	.	.												.	.	.	.	.
Template Sequence		M	I	R	V	M	A	T	G	V	F	D	I	L	H	L	G	H	I	H	Y	L	K	E	S	K	K	L	G	D	E	L	.	.	.	V	V	V	V	A	R	D	S	T	A	R	.	.	.	.	.	N	N	G	K	I	P	I	F	D	E	N	S	R	L	A	L	I	S	E	L	K	V	V	D	R	A	I	L	G	H
Template Known Secondary structure												S	S														T	T	S	S			.	.	.												.	.	.	.	.	T	T	T				S	S											T	S	T	T		S
Template Predicted Secondary structure																																	.	.	.												.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	R	F	A	A	L	T	A	Q	N	F	I	S	D	L	L	V	K	H	L	R	V	K	F	L	A	V	G	D	D	F	R	F	G	A	G	R	E	G	D	F	L	L	L	Q	K	A	G	M	E	Y	G	F	D	I	T	S	T	Q	T	F	C	E	G
Query Conservation
Alig confidence			.	.	.	.	.											.	.	.	.	.														.	.	.	.	.	.
Template Conservation			.	.	.	.	.											.	.	.	.	.														.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	G	D	M	M	K	T	V	I	E	V	.	.	.	.	.	K	P	D	I	I	T	L	G	Y	D	Q	K	F	.	.	.	.	.	.	D	E	A	E	L	Q	S	K	I	N	K	L	G	I	T	V	K	I	V	R	I	S	K	Y	D
Template Known Secondary structure		T	.	.	.	.	.	T										.	.	.	.	.			S						T	T				.	.	.	.	.	.												T	T
Template Predicted Secondary structure			.	.	.	.	.											.	.	.	.	.														.	.	.	.	.	.
Template SS confidence
		73						.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions