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Job DescriptionP39347
Confidence99.95%DateThu Jan 5 11:59:37 GMT 2012
Rank2Aligned Residues266
% Identity15%Templated1p7da_
SCOP infoDNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Lambda integrase-like, catalytic core
Resolution2.95

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80..... ....90.........100.........110.........120.........130.........140........
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Query Sequence  RTFKEVAIEWHGTNK. . KWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMR
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Template Sequence  MTLHSWLDRYEKILASRGIKQKTLINYMSKIK. AIRRGLPDAP. . . LTTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFR
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   74.....80.........90.........100..... ....110..... ....120.........130.........140.........
 
   149150.........160.........170.........180.........190.........200.........210.........220........
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Query Sequence  YAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFE
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Template Sequence  EAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAE. . . . . SSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDG
Template Known Secondary structure  TTS
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   153......160.........170.........180.........190... ......200.........210.........220.......
 
   229230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  ASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGY.
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Template Sequence  YLYVEQSKTGVKIAIPTAL. . . . . . . . . HIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGL
Template Known Secondary structure 
TTT

TT
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SSBSSB
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   228.230.........240...... ...250.........260.........270.........280.........290........
 
   308.310.........320.........330.........340.........350.......
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Query Sequence  . DTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKA
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Template Sequence  SFEGDPPTFHELRSLSAR. LYEKQI. SDKFAQHLLGHKSDTMASQ. RDDRG
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   299300.........310...... ...320.. .......330.........340. .....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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