Job Description P39347 Confidence 88.99% Date Thu Jan 5 11:59:37 GMT 2012 Rank 35 Aligned Residues 114 % Identity 15% Template d1a41a_ SCOP info DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Eukaryotic DNA topoisomerase I, catalytic core Resolution 2.30

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		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	A	R	W	S	E	I	D	F	E	A	S	I	W	T	I	P	P	E	R	E	P	I	P	G	V	K	H	S	H	R	G	S	K	M	R	T	T	H	L	V	P	L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G	A	H	D	L	I	F	I	G	D	H	D	S	H	K	P	M	S	E	N
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		L	L	T	L	K	N	K	H	I	E	I	S	P	D	E	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	.	.	.	.	.	.	.	.	.	.	.	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P	E	E	F	L	F	.	.	.	.	.	.	.	N	K	L	S	E	R
Template Known Secondary structure				T		B	G	G	G					T	T									T	T	T						.	.	.	.	.	.	.	.	.	.	.				T	T	S	S	S										T	T		T	T	S	B	S	S	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.												.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.																			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	N	S	A	L	R	V	M	G	Y	D	T	K	V	E	V	C	G	H	G	F	R	T	M	A	C	S	S	L	V	E	S	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	R	D	A	V	E	R	Q	M	S	H	M	A	R	N	S	V	R	A	A	Y	I	H
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation									.	.	.	.	.	.																																																						.
Template Sequence		K	V	Y	E	C	I	K	.	.	.	.	.	.	Q	F	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G	H	T	.	P	S	I	S	K	R	A	Y	M	A
Template Known Secondary structure									.	.	.	.	.	.		T	T																										S	S	S																				S	S		.
Template Predicted Secondary structure									.	.	.	.	.	.																																																						.
Template SS confidence
		207	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions