Return to main results Retrieve Phyre Job Id

Job DescriptionP39347
Confidence99.93%DateThu Jan 5 11:59:37 GMT 2012
Rank3Aligned Residues194
% Identity22%Templatec3nkhB_
PDB info PDB header:recombinationChain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   174.....180.........190....... ..200.........210.........220.........230.........240...
Predicted Secondary structure 













..........






















Query SS confidence 























. . . . . . . . . .













































Query Sequence  QHRPALELKRIPELLTKIDSYTGR. . . . . . . . . . PLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPG
Query Conservation                          ..........        
   



  

  
 
 


       
         
Alig confidence 























..........













































Template Conservation       

  

  

  
                            

 
  
   
   

                  
Template Sequence  QSNAYLELNEIESIIKDINTKAQKXHSGIHKRFYLFVALXTEFQALNGXRIGEXLAIQNEDIDFDNKSLNINGTIHWFHD
Template Known Secondary structure 
STTS

T
S



T
BGGGTTTT


Template Predicted Secondary structure 




































Template SS confidence 















































































  
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions