Job Description P39347 Confidence 98.65% Date Thu Jan 5 11:59:37 GMT 2012 Rank 15 Aligned Residues 118 % Identity 53% Template c2kkvA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h Resolution UNK

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	Q	S	K	A	R	T	F	K	E	V	A	I	E	W	H	G	T	N	K	K	W	S	E	D	H	A	H	R	V	L	K	S	L	E	D	N	L	F	A	A	L	G	E	R	N	I	A	E	L	K	T	R	D	L	L	A	P	I	K	A	V	E	M	S	G	R	L	E	V	A	A	R	L	Q	Q	R	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	N	S	G	A	Y	T	F	E	T	I	A	R	E	W	H	E	S	N	K	R	W	S	E	D	H	R	S	R	V	L	R	Y	L	E	L	Y	I	F	P	H	I	G	S	S	D	I	R	Q	L	K	T	S	H	L	L	A	P	I	K	E	V	D	T	S	G	K	H	D	V	A	Q	R	L	Q	Q	R	V	T
Template Known Secondary structure				S					S										T	T			S	S																	S	S	S	S	T	T	S		T	T				S	G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	M	R	Y	A	V	Q	S	G	L	I	D	Y	N	P	A	Q	E	M	A	G	A	V	A	S	C	N	R	Q	H	R	P	A	L	E	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	M	R	Y	A	V	Q	N	D	Y	I	D	S	N	P	A	S	D	M	A	G	A	L	S	T	T	K	A	R	H	Y	P	L	E	H	H	H
Template Known Secondary structure										T	T	S	S		S		S		S	S	S	S				S						S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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