Job Description P39347 Confidence 96.43% Date Thu Jan 5 11:59:37 GMT 2012 Rank 30 Aligned Residues 140 % Identity 16% Template c2f4qA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib Resolution 1.75 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		L	T	R	W	A	I	E	L	T	L	L	I	F	I	R	S	S	.	E	L	R	F	A	R	W	S	E	I	D	F	E	A	S	I	W	T	I	P	P	E	R	E	P	I	P	G	V	K	H	S	H	R	G	S	K	M	R	T	T	H	L	V	P	L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G
Query Conservation																			.
Alig confidence																			.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	X	A	L	X	T	R	L	L	H	V	A	R	F	R	V	T	Y	G	L	S	T	L	R	Q	R	H	V	V	V	D	G	N	T	V	T	F	R	F	K	G	K	H	G	V	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	H	K	A	T	S	D	R	T	L	A	A	N	X	Q	K	L	L	D	L	P	G
Template Known Secondary structure																					G	G	G		B	G	G	G					T	T									G	G	G		.	.	.	.	.	.	.	.	.	.	.	.																				T	S		S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.													.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		278	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.						.	.	.	.	330	.	.	.													.	.	.	.	.	.
Predicted Secondary structure															.																																				.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																																				.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	H	D	L	I	F	I	G	D	H	D	S	H	.	K	P	M	S	E	N	T	V	N	S	A	L	R	V	M	G	Y	D	T	K	V	E	V	C	G	H	G	F	R	T	M	A	C	S	S	.	.	.	.	.	L	V	E	S	G	L	W	S	.	.	.	.	.	.	.	.	.	.	.	.	R	D	A	V	E	R
Query Conservation															.																																				.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																		.	.	.	.															.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		P	W	L	F	Q	T	V	D	A	G	G	G	E	R	R	R	I	H	S	T	E	L	N	A	Y	L	R	E	V	I	G	.	.	.	.	P	F	T	A	K	D	F	R	T	W	G	G	T	L	L	A	A	E	Y	L	A	Q	Q	G	T	E	S	S	E	R	Q	A	K	K	V	L	V	D	C	V	K	F	V	A	D
Template Known Secondary structure		S	B	S	S					S	S	S	S																			T	.	.	.	.	T	S																									S	S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	S	H	M	A	R	N	S	V	R	A	A	Y	I	H
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		D	L	G	N	T	.	P	A	V	T	R	G	S	Y	I	C
Template Known Secondary structure				T			.								T	S
Template Predicted Secondary structure							.
Template SS confidence
		277	.	.	280	.		.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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