Job Description P39347 Confidence 99.86% Date Thu Jan 5 11:59:37 GMT 2012 Rank 8 Aligned Residues 269 % Identity 14% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		F	K	E	V	A	I	E	W	H	G	T	N	K	K	W	S	E	D	H	A	H	R	V	L	K	S	L	E	D	N	L	F	A	A	L	G	E	R	N	I	A	E	L	K	T	R	D	L	L	A	P	I	K	A	V	E	M	S	G	.	.	R	L	E	V	A	A	R	L	Q	Q	R	T	T	A	I	M	R	Y	A
Query Conservation																																																													.	.
Alig confidence													.																	.																															.	.
Template Conservation													.																	.
Template Sequence		F	L	L	S	V	R	E	F	M	Q	T	.	R	Y	Y	A	K	K	T	I	E	A	Y	L	H	W	I	T	.	R	Y	I	H	F	H	N	K	K	H	P	S	L	M	G	D	K	E	V	E	E	F	L	T	Y	L	A	V	Q	G	K	V	A	T	K	T	Q	S	L	A	L	N	S	L	S	F	L	Y	K	E	I
Template Known Secondary structure													.	T	T															.				T	T	S	S	S			G	G	G															T	T	T																					T
Template Predicted Secondary structure													.																	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	S	G	L	I	D	Y	N	P	A	Q	E	M	A	G	A	V	A	S	C	N	R	Q	H	R	P	A	L	E	L	K	R	I	P	E	L	L	T	K	I	D	S	Y	T	G	R	P	L	T	R	W	A	I	E	L	T	L	L	I	F	I	R	S	S	E	L	R	F	A	R	W	S	E	I	D	F	E	A	S
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	T	P	L	S	L	E	I	R	F	Q	R	S	Q	L	E	R	K	L	P	V	V	L	T	R	D	.	.	.	.	.	.	.	.	.	.	E	I	R	R	L	L	E	I	V	D	P	K	H	Q	L	P	I	K	L	L	Y	G	S	G	L	R	L	M	E	C	M	R	L	R	V	Q	D	I	D	F	D	Y	G
Template Known Secondary structure		S	S					T	T																				.	.	.	.	.	.	.	.	.	.						T	T	S	S														S									T		B	G	G	G			T	T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250																				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.									.	.	280	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Query Sequence		I	W	T	I	P	P	E	R	E	P	I	P	G	V	K	H	S	H	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	M	R	T	T	H	L	V	P	L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G	.	.	.	.	.	.	.	.	A	H	D	L	I	F
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	R	I	W	Q	G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A	L	K	E	K	Y	P	N	A	P	Y	E	F	R	W	H	Y	L	F	P	S	F	Q	L	S	L	D	P
Template Known Secondary structure									T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T		T	T	T	S	T	T	G	G	G		G	G	G	S	B	S	S	B		S	S					T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		I	G	D	H	D	S	H	K	P	M	S	E	N	T	V	N	S	A	L	R	V	M	G	Y	D	T	K	V	.	.	E	V	C	G	H	G	F	R	T	M	A	C	S	S	L	V	E	S	G	L	W	S	R	D	A	V	E	R	Q	M	S	H	M	A	R	N	S	V	R	A	A	Y	I	H
Query Conservation																														.	.
Alig confidence																														.	.																					.																			.
Template Conservation																																																				.																			.
Template Sequence		E	S	D	V	M	R	R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V	G	A	.	D	I	R	T	V	Q	E	Q	L	G	H	T	D	V	K	T	T	Q	.	I	Y	T	H
Template Known Secondary structure		T	T	T						B																T	T				S																		T	T		.										T		S	S					G	.	G	G
Template Predicted Secondary structure																																																				.																			.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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