Job Description P39347 Confidence 32.50% Date Thu Jan 5 11:59:37 GMT 2012 Rank 45 Aligned Residues 166 % Identity 10% Template c1p4eB_ PDB info PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex Resolution 2.70 Å

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		I	P	E	L	L	T	K	I	D	S	Y	T	G	R	P	L	T	R	W	A	I	E	L	T	L	L	I	F	I	R	S	S	E	L	R	F	A	R	W	S	E	I	D	F	E	A	S	I	W	T	I	P	P	E	R	E	P	I	P	G	V	K	H	S	H	R	G	S	K	M	R	T	T	H	L	V	.	.	.	P
Query Conservation																																																																														.	.	.
Alig confidence																																													.	.	.	.	.	.	.																											.	.	.
Template Conservation																																													.	.	.	.	.	.	.
Template Sequence		L	N	S	F	E	Y	T	S	R	F	T	K	T	K	T	L	Y	Q	F	L	F	L	A	T	F	I	N	C	G	R	F	S	D	I	K	N	V	D	P	K	S	F	K	.	.	.	.	.	.	.	L	V	Q	N	K	Y	L	G	V	I	I	Q	C	L	V	T	E	T	K	T	S	V	S	R	H	I	Y	F	F	S
Template Known Secondary structure					T	T	T	T		S	S																		T								T	B		G	G	G			.	.	.	.	.	.	.					T	T	T										S		T	T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.												.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G	A	H	D	L	I	F	I	G	D	H	D	S	H	K	P	M	S	.	.	.	.	.	.	.	.	.	.	.	E	N	T	V	N	S	A	L	R	V	M	G	Y	D	T	K	V	E	V	C	.	.	.	.	G	H	G	F	R	T	M	A	C	S	S
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		A	R	G	R	I	D	P	L	V	Y	L	D	E	F	L	R	N	S	E	P	V	L	K	R	V	N	R	T	G	N	S	S	S	N	K	Q	E	Y	Q	L	L	K	D	N	L	V	R	S	Y	N	K	A	L	K	K	N	A	P	Y	P	I	F	A	I	K	N	G	P	K	S	H	I	G	R	H	L	M	T	S	F
Template Known Secondary structure			S	S	S												T	T										B	S					S	S			S			S	S		T	T												T		S	S	G	G	G	G	S	T	T			S	T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	S	G	L	W	S	R	D	A	V	E	R	Q	M	S	H	M	A	R	N	S	V	R	A	A	Y	I	H	K	A	E	H	L	E	E	R
Query Conservation
Alig confidence									.	.					.									.	.	.	.
Template Conservation									.	.					.									.	.	.	.
Template Sequence		L	S	M	K	G	L	T	.	.	E	L	T	N	.	V	V	G	N	F	S	D	T	.	.	.	.	T	Y	T	H	Q	I	T	A	I	P	D	H
Template Known Secondary structure					T	T			.	.					.				T					.	.	.	.		S
Template Predicted Secondary structure									.	.					.									.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.			.	.	.	.		.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions