Job Description P39347 Confidence 74.89% Date Thu Jan 5 11:59:37 GMT 2012 Rank 39 Aligned Residues 109 % Identity 17% Template c1nh3A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: human topoisomerase i ara-c complex Resolution 3.10 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.							.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																		.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		L	T	R	W	A	I	E	L	T	L	L	I	F	I	R	S	.	.	.	.	.	.	S	E	.	.	.	.	.	.	L	R	F	A	R	W	S	E	I	D	F	.	.	.	.	.	.	E	A	S	I	W	T	I	P	P	E	R	E	P	I	P	G	V	K	H	S	H	R	G	S	K	M	R	T	T	H	L	V	P
Query Conservation																		.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	I	R	.	.	.	.	.	.	.	.	.	.	.	Y	Y	N	K	V	P
Template Known Secondary structure													T										B	T	T	B						S	T	T		B	G	G	G								T	T												.					.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.												.	.	.	540	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G	A	H	D	L	I	F	I	G	D	H	D	S	H	K	P	M	S	E	N	T	V	N	S	A	L	R	V	M	G	Y	D	T	K	V	E	V	C	G	H	G	F	R	T	M	A	C	S	S	L	V	E	S
Query Conservation
Alig confidence																									.	.	.	.	.	.	.																	.			.	.	.
Template Conservation																									.	.	.	.	.	.	.																	.			.	.	.
Template Sequence		V	E	K	R	V	F	K	N	L	Q	L	F	M	E	N	K	Q	P	E	D	D	L	F	.	.	.	.	.	.	.	D	R	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	.	E	G	.	.	.	L	T	A	K	V	F	R	T	Y	N	A	S	I	T	L	Q	Q
Template Known Secondary structure															S	S			T	T	S	B	S	S	.	.	.	.	.	.	.	T	T														S	.	S	S	.	.	.			T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.																	.			.	.	.
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.								.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.		.	.				.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions