Job Description P39347 Confidence 99.91% Date Thu Jan 5 11:59:37 GMT 2012 Rank 4 Aligned Residues 289 % Identity 14% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		72	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																												.																									.
Query SS confidence											.	.	.																												.																									.
Query Sequence		T	F	K	E	V	A	I	E	W	.	.	.	H	G	T	N	K	K	W	S	E	D	H	A	H	R	V	L	K	S	L	E	D	N	L	F	A	A	L	.	G	E	R	N	I	A	E	L	K	T	R	D	L	L	A	P	I	K	A	V	E	M	S	G	.	R	L	E	V	A	A	R	L	Q	Q	R	T	T	A	I
Query Conservation											.	.	.																												.																									.
Alig confidence											.	.	.																												.																									.
Template Conservation
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y	L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L	N	M	L
Template Known Secondary structure																T	G	G	G	S																						T	T				S	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.									.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		M	R	Y	A	V	Q	S	G	L	I	D	Y	N	P	A	Q	E	M	.	.	.	.	.	.	.	.	A	G	A	V	A	S	C	N	R	Q	H	R	P	A	L	E	L	K	R	I	P	E	L	L	T	K	I	D	S	Y	T	G	R	P	L	T	R	W	A	I	E	L	T	L	L	I	F	I	R	S	S	E	L	R
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I	A
Template Known Secondary structure				T	T	T	S			G	G	G	S																T	T	T																						T	T																							S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.												.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	R	W	S	E	I	D	F	E	A	S	I	W	T	I	P	P	E	R	E	P	I	P	G	V	K	H	S	H	R	G	S	K	M	R	T	T	H	L	V	P	L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G	A	H	D	L	I	F	I	.	.	.	.	.	.	.	.	.	.	.	G	D	H
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	.	.	.	.	.	.	.	.	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P
Template Known Secondary structure		S		B	S	S	S			S	T	T	T	T	S										S	S	S	S		.	.	.	.	.	.	.	.	S								T	T															S	S	S	T	T	S	B	S				B		T	T	S		B
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.											.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	H	K	P	M	S	E	N	T	V	N	S	A	L	R	V	M	G	Y	.	.	.	.	.	.	.	.	.	.	D	T	K	V	E	V	C	G	H	G	F	R	T	M	A	C	S	S	L	V	E	S	G	L	W	S	R	D	A	V	E	R	Q	M	S	H	M	A	R	N	S	V	R	A	A	Y	I	H	K	A
Query Conservation																						.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																									.																				.
Template Conservation																																																								.																				.
Template Sequence		S	A	T	S	Q	L	S	T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	.	S	I	P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	.	Y	I	R	N	L
Template Known Secondary structure			S	S																				T		S				S	S		S		S	S			T	T													T	T		.										T		S		S						.			T	T
Template Predicted Secondary structure																																																								.																				.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	L	E	E	R	R	L	M	L	Q	W	W	A	D
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		D	.	.	S	E	T	G	A	M	V	R	L	L	E	D
Template Known Secondary structure		G	.	.	G	G									T
Template Predicted Secondary structure			.	.
Template SS confidence
		329			330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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