Job Description P0A6W0 Confidence 96.78% Date Thu Jan 5 11:04:02 GMT 2012 Rank 22 Aligned Residues 190 % Identity 17% Template c3pbqA_ PDB info PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem Resolution 1.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																						.	.	.	60	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	D	N	A	I	L	E	N	I	L	R	Q	V	R	P	L	I	G	Q	G	K	V	A	D	Y	I	P	A	L	A	T	V	D	G	S	R	L	G	I	A	I	C	T	V	D	G	Q	L	F	Q	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	E	R	F
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	D	L	R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	.	.	.	.	.	.	.	.	.	.	.	K	A	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I	D	V	F
Template Known Secondary structure		S																				T	T		.	.	.	.	.	.	.	.	.	.	.										T	T	T		B								S				T	T			S	S			T	T	T	T									B
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.												.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Q	S	I	S	K	V	L	S	L	V	V	A	M	R	H	Y	S	E	E	E	I	W	Q	R	V	G	K	D	P	S	G	S	P	F	N	S	L	V	Q	L	E	M	E	Q	G	I	P	R	N	P	F	I	N	A	G	A	L	V	V	C	D	M	L	Q	G	R	L	S	A	P	R	Q	R	M	L	E	V	V
Query Conservation
Alig confidence																		.																									.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																		.																									.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		E	P	G	S	T	V	K	P	F	S	M	S	A	A	L	A	.	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	Y	T	I	.	.	R	D	V	S	R	N	S	R	Q	L	D	L	T	G	I	L	I	K	S	S	N	V	G	.	.	.	.	.	.	.	.	.	I	S	K	I	A
Template Known Secondary structure		B		G	G	G	G											.	T	T	S			T	T						T	T	S					T	T				.	.			S	S				S										T	T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																									.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.										.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	L	S	G	V	S	D	I	S	Y	D	T	V	V	A	R	S	E	F	E	H	S	A	R	N	A	A	I	A	W	L	M	K	S	F	G	N	F	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	T	T	V	L	Q	N	Y	F	H	Y	C	A	L	K	M	S	C	V
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template Sequence		F	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	E	S	I	Y	S	V	M	Q	Q	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y	G	Y	.	G	L	S	V	T	A	I
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	T	T	S			S				T	T					B					S	S											T	T		.	S		B	B
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		359	360	.																						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.											.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	A	R	T	F	V	F	L	A	N	Q	G	.	.	.	.	.	.	.	.	.	.	K	A	I	H	I	D	E	P	V	V	T	P	M	Q	A	R	Q	I	N	A	L	M
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L
Template Known Secondary structure												T	T	T						B	S	B			S	S								S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions