Job Description P0A6W0 Confidence 97.64% Date Thu Jan 5 11:04:02 GMT 2012 Rank 9 Aligned Residues 229 % Identity 19% Template c3dwkC_ PDB info PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer Resolution 3.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.													.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	M	D	N	A	I	L	E	N	I	L	R	Q	V	R	P	L	I	G	Q	G	K	V	A	D	Y	I	P	A	L	A	T	V	D	G	S	R	L	G	I	A	I	C	T	V	.	D	G	Q	L	F	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	G	D	A	Q	E	R	F	S	I	Q	S	I	S	K
Query Conservation																																																.								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																					.	.	.	.	.	.	.	.	.	.										.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	M	D	K	D	.	V	Q	K	T	L	Q	N	D	V	D	N	G	S	F	Y	K	N	K	D	Q	.	.	.	.	.	.	.	.	.	.	Q	V	G	A	T	I	L	D	S	K	T	G	G	L	V	A	I	S	G	G	R	D	F	K	D	V	V	N	R	N	Q	A	T	D	P	H	P	T	G	S	S	L	K
Template Known Secondary structure								.													S			S	S	T	T		.	.	.	.	.	.	.	.	.	.									T	T	T		B							S	T	T			T	T	T	S			T	T	T	S					G	G	G	G
Template Predicted Secondary structure								.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.											.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.																																										.	.	.	.	.	.	.
Query SS confidence					.																																										.	.	.	.	.	.	.
Query Sequence		V	L	S	.	L	V	V	A	M	R	H	Y	S	E	E	E	I	W	Q	R	V	G	K	D	P	S	G	S	P	F	N	S	L	V	Q	L	E	M	E	Q	G	I	P	R	N	.	.	.	.	.	.	.	P	F	I	N	A	G	A	L	V	V	C	D	M	L	Q	G	R	L	S	A	P	R	Q	R	M	L	E	V
Query Conservation					.																																										.	.	.	.	.	.	.
Alig confidence					.								.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template Sequence		P	F	L	A	Y	G	P	A	I	E	N	.	.	.	.	.	.	.	.	.	.	M	K	W	A	T	N	H	A	I	Q	D	E	S	S	Y	Q	V	D	G	S	T	F	R	N	Y	D	T	K	S	H	G	T	V	S	I	Y	D	A	L	R	Q	S	F	N	I	P	.	.	.	.	.	.	.	.	.	A	L	K	A
Template Known Secondary structure					T								.	.	.	.	.	.	.	.	.	.	S				T	T	B						S			B	S	S	S		B				T	T															T	T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.											.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.										.	460	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		V	R	G	L	S	G	V	S	D	I	S	Y	D	T	V	V	A	R	S	E	F	E	H	S	A	R	N	A	A	I	A	W	L	M	K	S	F	G	N	F	H	H	D	V	T	T	V	L	Q	N	Y	F	H	Y	C	A	L	K	M	S	C	V	E	L	A	R	T	F	V	F	L	A	N	Q	G	K	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																																						.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		W	Q	S	V	K	Q	N	A	G	N	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	K	F	A	A	K	L	G	.	L	N	Y	E	G	D	I	G	P	S	E	V	L	G	G	S	A	S	E	F	S	P	T	Q	L	A	S	A	F	A	A	I	A	N	G	G	T	Y	N	N	A
Template Known Secondary structure									S		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	.				S	S								T	T		T	T																T	T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.																		.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
																	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	H	I	D	E	P	V	V	T	P	M	Q	A	R	Q	I	N	A	L	M	A	T	S	G	M	Y	Q	N	A	G	E	F	A	W	R	V	G	L	P	.	.	A	K	S	G	V	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	S	I	Q	K	V	V	T	R	D	G	E	T	I	E	Y	D	H	T	S	H	K	A	M	S	D	Y	T	A	Y	M	L	A	E	M	L	K	G	T	F	K	P	Y	G	S	A	Y	G	H	G	V	S	G	V	N	M	G	A	K	T	G	T	G	T	Y	G	A	E	T	Y	S	Q	Y	N	L	P	D	N	A	A
Template Known Secondary structure		B								S	S	S													S														T	T	S	S	T	T	S	T	T	T	T		S		S	S														T	T					T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
				265	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	I	V	A	I	V	P	H	E	M	A	I	A	V	W
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		K	D	V	W	I	N	G	F	T	P	Q	Y	T	M	S	V	W
Template Known Secondary structure											S	S
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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