Job Description P0A6W0 Confidence 97.38% Date Thu Jan 5 11:04:02 GMT 2012 Rank 12 Aligned Residues 279 % Identity 14% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																		60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	I	L	E	N	I	L	R	Q	V	R	P	L	I	G	Q	G	K	V	A	D	Y	I	P	A	L	A	T	V	D	G	S	R	L	G	I	A	I	C	T	V	D	G	Q	L	F	Q	A	G	D	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	F	S	I	Q	S	I	S	K
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		Q	D	S	V	D	A	L	L	K	S	Y	F	N	S	E	L	G	N	G	G	A	K	Y	S	.	.	.	.	.	.	.	E	G	V	Y	A	V	A	L	N	P	Q	T	G	A	V	L	S	M	S	G	L	K	H	D	L	K	T	G	E	L	T	P	D	S	L	G	T	V	T	N	V	F	V	P	G	S	V	V	K
Template Known Secondary structure																				S	T	T	T	T		.	.	.	.	.	.	.										T	T	T		B											T	T	T							T	T							B			G	G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340								.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	S	L	V	V	A	M	R	H	Y	S	E	E	E	I	W	Q	R	V	G	K	D	P	S	G	S	P	F	N	S	L	V	Q	L	E	M	E	Q	G	I	P	R	N	P	F	I	N	A	G	A	L	V	V	C	D	M	L	Q	G	R	L	S	A	P	R	Q	R	M	L	E	V	V	R	G	L	S	G	V	S
Query Conservation
Alig confidence												.																																																	.	.	.	.	.	.	.	.	.
Template Conservation												.																																																	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	T	I	S	S	G	W	E	N	.	G	V	L	S	G	N	Q	T	L	T	D	Q	P	I	V	F	Q	G	S	A	P	I	Y	S	W	Y	K	L	A	Y	G	S	F	P	I	T	A	V	E	A	L	E	Y	S	S	N	A	Y	.	.	.	.	.	.	.	.	.	V	V	Q	T	A	L	G	I	M	G	Q	T
Template Known Secondary structure											T	.	T	S			S	S								B		B	T	T	S			B			T	T	T	T	T	T		S												T					.	.	.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure												.																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.										.	.	450	.	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	S	Y	D	T	V	V	A	R	S	E	F	E	H	S	A	R	N	A	A	I	A	W	L	M	K	S	F	G	N	F	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	T	T	V	L	Q	N	Y	F	H	Y	C	A	L	K	M	S	C	V	E	L	A	R	T	F	V	F	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation									.	.	.																																																						.
Template Sequence		Y	Q	P	N	M	F	V	.	.	.	G	T	S	N	L	E	S	A	M	G	K	L	R	S	T	F	G	E	Y	G	L	G	S	A	T	G	I	D	L	P	D	E	S	T	G	L	V	P	K	E	Y	N	F	A	N	F	I	T	N	A	F	G	Q	.	F	D	N	Y	T	P	M	Q	L	A	Q	Y	V	A	T	I
Template Known Secondary structure				T	T	B			.	.	.			T	T														T	T	T	T	T	S					S	S	S						B			S	S										T	T	T	S	.	S	S	B	B
Template Predicted Secondary structure									.	.	.																																																						.
Template SS confidence
		460	.	.	.	.	.	.				.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		213	.	.	.	.	.																												.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																					.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																					.	.
Query Sequence		A	N	Q	G	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	I	D	E	P	V	V	T	P	M	Q	A	R	Q	I	N	A	L	M	.	.	.	.	A	T	S	G	M	Y	Q	N	A	G	E	F	A	W	R	V	G	L	P	A	.	.	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																					.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																					.	.
Template Conservation
Template Sequence		A	N	N	G	V	R	L	A	P	H	I	V	E	G	I	Y	D	N	N	D	K	G	G	L	G	E	L	I	Q	A	I	D	T	K	E	I	N	K	V	N	I	S	E	S	D	M	A	I	L	H	Q	G	F	Y	Q	V	S	H	G	T	S	P	L	T	T	G	R	A	F	S	D	G	A	T	V	S	I	S	G	K
Template Known Secondary structure			T	T	T						B	S									T	T	S	S																	S	S																				S	T	T				G	G	G	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure															.	.	.																					.	.	.
Query SS confidence															.	.	.																					.	.	.
Query Sequence		S	G	V	G	G	G	I	V	A	I	V	P	H	.	.	.	E	M	A	I	A	V	W	S	P	E	L	D	D	A	G	N	S	L	A	G	.	.	.	I	A	V	L	E	Q	L	T	K	Q	L	G	R	S
Query Conservation															.	.	.																					.	.	.
Alig confidence															.	.	.																					.	.	.
Template Conservation
Template Sequence		T	G	T	N	T	N	A	V	A	Y	A	P	T	E	N	P	Q	I	A	V	A	V	V	F	P	H	N	T	N	L	T	K	N	V	G	P	A	I	A	R	D	I	I	N	L	Y	N	Q	H	H	P	M	N
Template Known Secondary structure													S	T	T	S										T	T				S	S																			S
Template Predicted Secondary structure
Template SS confidence
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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