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Job DescriptionP36649
Confidence100.00%DateThu Jan 5 11:53:29 GMT 2012
Rank16Aligned Residues415
% Identity31%Templatec3aw5A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:multicopper oxidase; PDBTitle: structure of a multicopper oxidase from the hyperthermophilic archaeon2 pyrobaculum aerophilum
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60......... 70.........80.........90.........100.........110.........120.........130
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Query Sequence  IGAGQSTFGGKTATTWGY. NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIPPGGKRSVTLN
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Template Sequence  VPPLIKEATYIEATASGYMAEGVLNPTIILRRGQRVDMTLKNKLTEPTIVHWHGFDVNWHNDAHPSFAITPGESYNYSFD
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S

STTTTS
TT

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T
GGG
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   42.......50.........60.........70.........80.........90.........100.........110.........120.
 
   131........140.........150.........160.........170.........180.........190.........200.........210
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Query Sequence  VDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWF
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Template Sequence  VVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSD. . . LGFKYGVNDLPLVISDRRFIGGAPV. YNPTPMEMIAGFL
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S
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   122.......130.........140.........150......... 160.........170.........180.... .....190.......
 
   211........220.........230.........240.........250.. .......260.........270.........280.....
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Query Sequence  GDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNR. . . . . PLYVIASDGGLLPEPVKVSELPVLMGERFEVLV
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Template Sequence  GNAVLVNGVKDAVFKLSGGSYRLRLVNGSNARLYMLSI. VKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVV
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STTT

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   198.200.........210.........220.........230..... ....240.........250.........260.........270......
 
   286...290.........300.........310.........320.........330.........340.........350.........360.....
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Query Sequence  EVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQ
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Template Sequence  ELGE. GVYLLKNTPFDPMHLEMG. . . . . . . . . . . . . . HGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPT
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   277..280 .........290........ .300.........310.........320.........330.........340.
 
   366...370.........380.........390.........400.........410.........420.. .......430.........440....
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Query Sequence  MLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMF. AAAKGQYERWVISGVGDMMLHP
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Template Sequence  RTRRFALSLSG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . MQWTINGMFWNASNPLFEHVSVEGVELWEIVNDKASMPHP
Template Known Secondary structure  T.............................TTTB


TT
TT




SSS

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   342.......350.. .......360.........370.........380.........390..
 
   445....450.........460.... .....470.........480 .........490.........500.........510.
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Query Sequence  FHIHGTQFRILSENGKPPAA. . . . . . . . . . . . HRAGWKDTVKVEGNVS. EVLVKFNHDAPKEHAYMAHCHLLEHEDTGMM
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Template Sequence  MHLHGFPMWIIERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRG. QLFPFHCHNLEHEDGGMM
Template Known Secondary structure  SSS
BS

TT

STT


GGGGS
BS
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   393......400.........410.........420.........430.........440.........450... ......460.........470.
 
   512....
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Query Sequence  LGFTV
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Template Sequence  INIAV
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   472....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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