Job Description P36649 Confidence 100.00% Date Thu Jan 5 11:53:29 GMT 2012 Rank 21 Aligned Residues 316 % Identity 16% Template c2zooA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 Resolution 1.95 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.
Predicted Secondary structure																																				.																																						.	.
Query SS confidence																																				.																																						.	.
Query Sequence		V	F	A	A	E	R	P	T	L	P	I	P	D	L	L	T	T	D	A	R	N	R	I	Q	L	T	I	G	A	G	Q	S	T	F	.	G	G	K	T	A	T	T	W	G	Y	N	G	N	L	L	G	P	A	V	K	L	Q	R	G	K	A	V	T	V	D	I	Y	N	Q	L	T	E	.	.	E	T	T	L	H	W
Query Conservation																																				.																																						.	.
Alig confidence																																				.																																						.	.
Template Conservation
Template Sequence		A	I	L	T	P	P	P	M	V	P	P	A	I	N	R	D	H	S	A	K	V	V	I	N	L	E	T	R	E	Q	V	G	R	I	A	D	G	V	E	Y	V	F	W	S	F	G	E	T	V	P	G	S	F	I	R	V	R	E	G	D	E	I	E	F	N	L	S	N	H	P	S	S	K	M	P	H	N	I	D	L
Template Known Secondary structure					B		T	T									S	S																			T	T									T	T	B	S	S			B					T	T											T	T		S	S		B
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	L	E	V	P	G	E	V	D	G	G	P	Q	G	I	I	P	P	G	G	K	R	S	V	T	L	N	V	D	Q	P	A	A	T	C	W	F	H	P	H	Q	H	G	K	T	G	R	Q	V	A	M	G	L	A	G	L	V	V	I	E	D	D	E	I	L	K	L	M	L	P	K	Q	W	G	I	D	D	V	P
Query Conservation
Alig confidence								.	.																									.									.																											.	.	.	.	.	.
Template Conservation								.	.																									.									.																											.	.	.	.	.	.
Template Sequence		H	A	V	T	G	P	.	.	G	G	G	A	E	S	S	F	T	A	P	G	H	T	S	T	F	N	F	K	A	L	N	P	.	G	L	Y	I	Y	H	C	A	.	T	A	P	V	G	M	H	I	A	N	G	M	Y	G	L	I	L	V	E	P	K	E	G	L	A	P	.	.	.	.	.	.	V	D	R	E	Y	Y
Template Known Secondary structure		T	T			S	G	.	.	G	G	G	G	G	G			B		T	T											S		.									.		S	S							T	T										T	T					.	.	.	.	.	.		S
Template Predicted Secondary structure								.	.																									.									.																											.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																					.																			.	.	.	.	.	.
Query SS confidence																					.																			.	.	.	.	.	.
Query Sequence		V	I	V	Q	D	K	K	F	S	A	D	G	Q	I	D	Y	Q	L	D	.	V	M	T	A	A	V	G	W	F	G	D	T	L	L	T	N	G	A	.	.	.	.	.	.	I	Y	P	Q	H	A	A	P	R	G	W	L	R	L	R	L	L	N	G	C	N	A	R	S	L	N	F	A	T	S	D	N	R	P	L	Y
Query Conservation																					.																			.	.	.	.	.	.
Alig confidence																					.																			.	.	.	.	.	.																														.
Template Conservation																																																																											.
Template Sequence		L	V	Q	G	D	F	Y	T	K	G	E	F	G	E	A	G	L	Q	P	F	D	M	A	K	A	I	D	E	D	A	D	Y	V	V	F	N	G	S	V	G	S	T	T	D	E	N	S	L	T	A	K	V	G	E	T	V	R	L	Y	I	G	N	G	G	P	N	L	V	S	S	F	H	V	.	I	G	E	I	F	D
Template Known Secondary structure									B	S	S		T	T							B							T	T			S					T	T	S	T	T	T	T	S	G	G	G						T	T												S	S								.		T			B	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	S	D	G	G	L	L	P	E	P	V	K	V	S	E	L	P	V	L	M	G	E	R	F	E	V	L	V	E	V	N	D	N	K	P	F	D	L	V	T	L	P	V	S	Q	M	G	M	A	I	A	P	F	D	K	P	H	P	V	M	R	I	Q	P	I	A	I	S	A	S	G	A	L	P	D	T	L	S
Query Conservation
Alig confidence											.																																												.	.	.	.	.	.	.
Template Conservation											.																																												.	.	.	.	.	.	.
Template Sequence		T	V	Y	V	E	G	G	S	L	.	K	N	H	N	V	Q	T	T	L	I	P	A	G	G	A	A	I	V	E	F	K	V	E	V	P	G	T	F	I	L	V	D	H	S	I	F	R	A	F	N	K	G	A	.	.	.	.	.	.	.	L	A	M	L	K	V	E	G	P	D	D	H	S	I	F	T	G	K	T	A
Template Known Secondary structure					G	G	G	S	S		.				S	B	S						T	T											S									S	S	T					T	T	S		.	.	.	.	.	.	.								S				T	T	T
Template Predicted Secondary structure											.																																												.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	A	L	P	S	L	E	G	L	T	V	R	K	L	Q	L	S	M	D	P	M	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	V	Y	L	P	E	G	S	A	I	Q	S	L	D	N	T	F	T	K	I	T	A	N	N
Template Known Secondary structure		S		S	S					S																S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions