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Job DescriptionP36649
Confidence100.00%DateThu Jan 5 11:53:29 GMT 2012
Rank28Aligned Residues287
% Identity29%Templatec2dv6F_
PDB info PDB header:oxidoreductaseChain: F: PDB Molecule:nitrite reductase; PDBTitle: crystal structure of nitrite reductase from hyphomicrobium2 denitrificans
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50......... 60.........70.........80.........90........ .
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Query Sequence  SRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTF. GGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEET. . T
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Template Sequence  SGADITRDPADLPGPIGPRQAKTVRIDLETVEVKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHS
Template Known Secondary structure  SSB

B

TT
S




S



TTTTBBS


TT

TT
SS
B
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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   100.........110.........120.........130.........140.........150.........160.........170.........
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Query Sequence  LHWHGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGID
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Template Sequence  VDFHGATGPGGAAAFTQ. . TDPGEETVVTFKALIP. GIYVYHCA. TPSVPTHITNGMYGLLLVEPEGGLPQ. . . . . . VDR
Template Known Secondary structure 
TT

SGGGGGGG

..B
TT


S
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.SSSTT

TT
S

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S
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   221........230....... ..240.........250... ......260. ........270.........280....... ..290
 
   180.........190.........200..... ....210.........220.........230.........240.........250........
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Query Sequence  DVPVIVQDKKFSADGQIDYQLDVMTA. AVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIA
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Template Sequence  EFYVMQGEIYTVKSFGTSGEQEMDYEKLINEKPEYFLFNGSVGSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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BSS
TT



B
TT

STTSTTTB...................................
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   291........300.........310.........320.........330.....
 
   259260.........270.........280.........290.........300.........310.........320.........330........
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Query Sequence  SDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLP
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   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  ALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMN
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Template Known Secondary structure  ..............................................................................TT
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   336.
 
   419420.........430.........440.........450.........460.........470.........480.........490........
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Query Sequence  KPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMA
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Template Sequence  SHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLGSVVSP. PLIGVQTVSVPPG. GATIVDFKIDRAG. . RYIL
Template Known Secondary structure  TS

TT
SS

T


GGG
SSS
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   338.340.........350.........360.........370.........380... ......390...... ...400......... 410...
 
   499500.........510......
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Query Sequence  HCHLLEHEDTGMMLGFTV
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Template Sequence  VDHALSRLEHGLVGFLNV
Template Known Secondary structure  SSGGGGGGT

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   414.....420.........430.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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