Return to main results Retrieve Phyre Job Id

Job DescriptionP36649
Confidence20.31%DateThu Jan 5 11:53:29 GMT 2012
Rank171Aligned Residues73
% Identity15%Templatec1v55B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   75....80.........90.........100.........110 ..... ....120.........130.........140.......
Predicted Secondary structure 

















...




....


















Query SS confidence 



































. . .




. . . .































Query Sequence  GPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE. . . VDGGP. . . . QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGK
Query Conservation 

 
    

 
 
 
 
 
   







     ... 



....
  
 

 
  
 
      

 




  
 
Alig confidence 
















...




...







...




....





















..



....
Template Conservation   
 
 

    
   

...
 


...


 

 
  
 




            
 
 
 
 
 

 .. 
  ....
Template Sequence  DNRVVLPMEMTIRMLVS. . . SEDVL. . . HSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGS. . NHSF. . . .
Template Known Secondary structure  SS
TTS
...SSS
...GGGT
TT



SS



S

ST..TGGG....
Template Predicted Secondary structure 





...


...



















..

....
Template SS confidence 















































































   139140.........150..... ....160 .........170.........180.........190.........200.. ....
 
   148.150.........160.......
Predicted Secondary structure 







Query SS confidence 



















Query Sequence  TGRQVAMGLAGLVVIEDDEI
Query Conservation 
  
   

 
 


     
Alig confidence  ........











Template Conservation  ........
   
 
     
Template Sequence  . . . . . . . . MPIVLELVPLKY
Template Known Secondary structure  ........


Template Predicted Secondary structure  ........

Template SS confidence 



















   207..210........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions