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Job DescriptionP36649
Confidence100.00%DateThu Jan 5 11:53:29 GMT 2012
Rank33Aligned Residues235
% Identity19%Templatec1sddA_
PDB info PDB header:blood clottingChain: A: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.. .......80.........90.........100.........110
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Query Sequence  DARNRIQLTIGAGQSTFGGKTATTWGYNGN. . . . . . . . . . . . LLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE
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Template Sequence  AKLRQFYVAAQSIRWNTSFKKIVYREYEAYFQKEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKF
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TTT






SS

S



TT

SSS
B

SS


TT
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   111.... .. ..120.........130... ......140.........150.........160.........170
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Query Sequence  VDGGP. . . . . . . . . QG. . IIPPGGKRSVTLNVDQ. . . . . . . . . PAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKL
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Template Sequence  SEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNL. . VEDFNSGLIGPLLICKKGTLTE
Template Known Secondary structure  TS


S




TTT
B
TT


GGGS

SSS
S

SSS..TT


TT
B
T
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   95....100.........110.........120.........130.........140.........150 .........160.........170..
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  MLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSD
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Template Sequence  DGTQKMFEKQHVLMFAVFDESKS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TSSBSSS





B

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   173......180.........190.....
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  NRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGAL
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   331........340.........350.........360.........370.........380.........390.........400.........410
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Query Sequence  PDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WNQTSSLMYTV
Template Known Secondary structure  .....................................................................SS




S
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   411........420.........430.........440.. .......450.........460.........470.........480.........
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Query Sequence  NGQAFDMNKPMFAAAKGQYERWVISGVGDMML. HPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHD
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Template Sequence  NGYVNGTMP. . . . . . . DITVCAHLIGMSSGPELFSIHFNGQVLEQ. . . . . . . . . . . NHHKISAITLVSAT. . . . . . . . . S
Template Known Secondary structure  SS

SS


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BB


SSS


B
SSTT
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S


TT
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   207..210..... ....220.........230.........240.... .....250........ .
 
   490.........500.........510....
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Query Sequence  APKEHAYMAHCHLLEHEDTGMMLGF
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Template Sequence  TTG. . RWTIASLIPRHFQAGMQAYI
Template Known Secondary structure  B

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B

STTTGGGT
B


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Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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