Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	R	L	A	E	I	L	D	Q	M	S	A	V	L	N	D	L	K	T	V	M	D	Q	E	Q	Q	H	L	S	M	G	Q	I	N	G	S	Q	L	Q	W	I	T	E	Q	K	S	S	L	L	A	T	L	D	Y	L	E	Q	L	R
Secondary structure
SS confidence
Disorder		?	?																												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	K	E	P	N	T	A	N	S	V	D	I	S	Q	R	W	Q	E	I	T	V	K	T	Q	Q	L	R	Q	M	N	Q	H	N	G	W	L	L	E	G	Q	I	E	R	N	Q	Q	A	L	E	M	L	K	P	H	Q	E	P	T	L	Y
Secondary structure
SS confidence
Disorder							?	?	?	?																																												?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Sequence		G	A	N	G	Q	T	S	T	T	H	R	G	G	K	K	I	S	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3opc chain B Region: 2 - 114 Aligned: 111 Modelled: 113 Confidence: 99.9% Identity: 23% PDB header:chaperone Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of flgn chaperone from bordetella pertussis Phyre2 PDB 2fup chain A Region: 2 - 112 Aligned: 107 Modelled: 111 Confidence: 99.8% Identity: 21% PDB header:biosynthetic protein Chain: A: PDB Molecule:hypothetical protein pa3352; PDBTitle: crystal structure of a putative flagella synthesis protein flgn2 (pa3352) from pseudomonas aeruginosa at 1.48 a resolution Phyre2 PDB 2fup chain A domain 1 Region: 2 - 112 Aligned: 107 Modelled: 111 Confidence: 99.8% Identity: 21% Fold: STAT-like Superfamily: FlgN-like Family: FlgN-like Phyre2 PDB 3a7m chain A Region: 10 - 121 Aligned: 100 Modelled: 101 Confidence: 8.7% Identity: 10% PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid Phyre2 1 c3opcB_ 2 c2fupA_ 3 d2fupa1 4 c3a7mA_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3opcB_ 99.9 23 PDB header:chaperone Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of flgn chaperone from bordetella pertussis 2 c2fupA_ 99.8 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:hypothetical protein pa3352; PDBTitle: crystal structure of a putative flagella synthesis protein flgn2 (pa3352) from pseudomonas aeruginosa at 1.48 a resolution 3 d2fupa1 99.8 21 Fold:STAT-like Superfamily:FlgN-like Family:FlgN-like 4 c3a7mA_ 8.7 10 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0