Return to main results Retrieve Phyre Job Id

Job DescriptionP06961
Confidence40.91%DateThu Jan 5 10:59:31 GMT 2012
Rank40Aligned Residues176
% Identity12%Templated1vqra_
SCOP infoHD-domain/PDEase-like HD-domain/PDEase-like modified HD domain
Resolution2.25

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120..... ....130.........140.........150.........160.........170.........180........
Predicted Secondary structure 








..
















Query SS confidence 














. .






























































Query Sequence  NGLGDLQNRLLRHVS. . PAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWKETESALTTR
Query Conservation   
  

    

   ..  
 








 





  


 
   
   
        
  

 


  

 


   
Alig confidence 














..
















......















.......
















Template Conservation      
  
 

  
  

 

 
   
       ......      

  
  

 .......


 


 


      
Template Sequence  HXIGDXNELLLKSVEVLPPLPDTVSKLRKYVSEA. . . . . . NIETXKVAEIISSDPL. . . . . . . XTAKLLQLANSPYYGFT
Template Known Secondary structure 

TTTSS




......


T
.......TSGGGT
T
Template Predicted Secondary structure 









......



.......


Template SS confidence 















































































   0.........10.........20.........30... ......40......... 50.........60......
 
   189190.........200.........210.........220........ .230.........240...... ...250.......
Predicted Secondary structure 













.....



......


Query SS confidence 







































. . . . .

















. . . . . .










Query Sequence  NPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDT. . . . . GIHTLMTLSMAAMLSPQV. . . . . . DVRFATLCHDL
Query Conservation          
                               .....  


             ...... 
 







Alig confidence 







































.....

















......










Template Conservation    
 

  

  

   
  

                       
  
   
  
  

        
 
  






Template Sequence  REITTINQVITLLGVGNIINIVXADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAXLLRL
Template Known Secondary structure  T


S



TT






GGGT

TTT
Template Predicted Secondary structure 














Template SS confidence 















































































   6970.........80.........90.........100.........110.........120.........130.........140........
 
   258.260.........270....... ..280.........290.........
Predicted Secondary structure 



















....................



Query SS confidence 



















. . . . . . . . . . . . . . . . . . . .





















Query Sequence  GKGLTPPELWPRHHGHGPAG. . . . . . . . . . . . . . . . . . . . VKLVEQLCQRLRVPNEIRDLAR
Query Conservation 

  
          
   
....................
     
  




      
 
Alig confidence 



















....................





















Template Conservation 
 
 
                          
   

  
  

  
   
 

  
   
 
Template Sequence  GIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESIC
Template Known Secondary structure  TT


TSS
TT

Template Predicted Secondary structure 














Template SS confidence 





























































   149150.........160.........170.........180.........190.........200.........210
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions