Job Description P06961 Confidence 100.00% Date Thu Jan 5 10:59:31 GMT 2012 Rank 6 Aligned Residues 236 % Identity 22% Template d1miwa1 SCOP info Poly A polymerase C-terminal region-like Poly A polymerase C-terminal region-like Poly A polymerase C-terminal region-like Resolution 3.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		L	L	R	H	V	S	P	.	.	.	A	F	G	E	D	P	L	R	V	L	R	V	A	R	F	A	A	R	Y	A	H	L	G	F	R	I	A	D	E	T	L	A	L	M	R	E	M	T	H	A	G	E	L	E	H	L	T	P	E	R	V	W	K	E	T	E	S	A	L	T	T	R	N	P	Q	V	F	F	Q	V
Query Conservation									.	.	.
Alig confidence									.	.	.																				.	.	.															.	.
Template Conservation																															.	.	.															.	.
Template Sequence		I	I	R	T	V	G	E	A	E	K	R	F	R	E	D	A	L	R	X	X	R	A	V	R	F	V	S	E	L	.	.	.	G	F	A	L	A	P	D	T	E	Q	A	I	V	Q	.	.	N	A	P	L	L	A	H	I	S	V	E	R	X	T	X	E	X	E	K	L	L	G	G	P	F	A	A	R	A	L	P	L
Template Known Secondary structure			B			S	S										T														.	.	.				B											.	.		G	G	G	G	G	G	S														T	S	S	S
Template Predicted Secondary structure																															.	.	.															.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	D	C	G	A	L	R	V	L	F	P	E	I	D	A	L	F	G	V	P	A	P	A	K	W	H	P	E	I	D	T	G	I	H	T	L	M	T	L	S	M	A	A	M	L	S	P	Q	V	D	V	R	F	A	T	L	C	H	D	L	G	K	G	L	T	P	P	E	L	W	P	R	H	H	G	H	G	P	A
Query Conservation
Alig confidence										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	E	T	G	L	N	A	.	Y	L	P	G	L	A	G	K	E	K	Q	L	R	L	A	A	A	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	W	L	A	A	R	E	E	R	W	A	L	L	C	H	A	L	G	V	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	T	T	T	T	.	S	S	T	T		S	S								G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G			S													T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	L	V	E	Q	L	C	Q	R	L	R	V	P	N	E	I	R	D	L	A	R	L	V	A	E	F	H	D	L	I	H	T	F	P	M	L	N	P	K	T	I	V	K	L	F	D	S	I	D	A	W	R	K	P	Q	R	V	E	Q	L	A	L	T	S	E	A	D	V	R	G	R	T	G	F	E	S	A	D
Query Conservation
Alig confidence		.	.	.	.																																															.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																															.	.	.	.	.	.	.
Template Sequence		.	.	.	.	S	R	P	F	L	R	A	W	K	L	P	N	K	V	V	D	E	A	G	A	I	L	T	A	L	A	D	I	P	R	P	E	A	W	T	N	E	Q	L	F	S	A	G	L	E	R	.	.	.	.	.	.	.	A	L	S	V	E	T	V	R	A	A	F	T	G	A	P	P	G	P	W	H	E	K	L
Template Known Secondary structure		.	.	.	.								T	T																					S	G	G	G														.	.	.	.	.	.	.																S
Template Predicted Secondary structure		.	.	.	.																																															.	.	.	.	.	.	.
Template SS confidence
						264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.								310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																											.				.
Query SS confidence																											.				.
Query Sequence		Y	P	Q	G	R	W	L	R	E	A	W	E	V	A	Q	S	V	P	T	K	A	V	V	E	A	.	G	F	K	.	G	V	E	I	R	E	E	L	T	R	R	R	I	A	A	V	A	S
Query Conservation																											.				.
Alig confidence																											.				.
Template Conservation
Template Sequence		R	R	R	F	A	S	L	P	I	K	T	K	G	E	L	A	V	N	G	K	D	V	I	E	W	V	G	K	P	A	G	P	W	V	K	E	A	L	D	A	I	W	R	A	V	V	N	G
Template Known Secondary structure						T	T		S		S	S	G	G	G		S	S										T			S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions