Job Description P06961 Confidence 100.00% Date Thu Jan 5 10:59:31 GMT 2012 Rank 3 Aligned Residues 349 % Identity 23% Template c3h37B_ PDB info PDB header:transferase Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein; PDBTitle: the structure of cca-adding enzyme apo form i Resolution 2.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.											.
Query SS confidence																																													.	.	.	.	.	.											.
Query Sequence		M	K	I	Y	L	V	G	G	A	V	R	D	A	L	L	G	L	P	V	K	D	R	D	W	V	V	V	G	S	T	P	Q	E	M	L	D	A	G	Y	Q	Q	V	G	.	.	.	.	.	.	R	D	F	P	V	F	L	H	P	Q	.	T	H	E	E	Y	A	L	A	R	T	E	R	K	S	G	S	G	Y	T	G
Query Conservation																																													.	.	.	.	.	.											.
Alig confidence																											.																		.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	P	V	Y	V	V	G	G	F	V	R	D	L	L	L	G	I	K	N	L	D	I	D	I	V	.	V	E	G	N	A	L	E	F	A	E	Y	A	K	R	F	L	P	G	K	L	V	K	H	D	K	F	X	T	A	S	L	F	L	K	G	G	L	R	I	D	I	A	T	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T									T										.		S	S												T	S								T	T	T	T							T	T	S								.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.																								.
Query SS confidence																																.	.	.	.																								.
Query Sequence		F	T	C	Y	A	A	P	D	V	T	L	E	D	D	L	K	R	R	D	L	T	I	N	A	L	A	Q	D	D	N	.	.	.	.	G	E	I	I	D	P	Y	N	G	L	G	D	L	Q	N	R	L	L	R	H	V	S	P	.	A	F	G	E	D	P	L	R	V	L	R	V	A	R	F	A	A	R	Y	A	H	L
Query Conservation																																.	.	.	.																								.
Alig confidence																																.	.	.	.																								.																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	R	L	P	D	V	E	X	S	T	I	K	K	D	L	Y	R	R	D	F	T	I	N	A	X	A	I	K	L	N	P	K	D	F	G	L	L	I	D	F	F	G	G	Y	R	D	L	K	E	G	V	I	R	V	L	H	T	L	S	F	V	D	D	P	T	R	I	L	R	A	I	R	F	E	Q	R	F	.	.	.
Template Known Secondary structure								G	G	G	T							T	S	S	B	G	G	G	S						S	G	G	G	T	T					S	S	S							T	T				B	S	S	T	T						T													T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	R	I	A	D	E	T	L	A	L	M	R	E	M	T	H	A	G	E	L	E	H	L	T	P	E	R	V	W	K	E	T	E	S	A	L	T	T	R	N	P	Q	V	F	F	Q	V	L	R	D	C	G	A	L	R	V	L	F	P	E	I	D	A	L	F	G	V	P	A	P	A	K	W	H	P	E	I	D	T
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		D	F	R	I	E	E	T	T	E	R	L	L	K	Q	A	V	E	E	G	Y	L	E	R	T	T	G	P	R	L	R	Q	E	L	E	K	I	L	E	E	K	N	P	L	K	S	I	R	R	X	A	Q	F	D	V	I	K	H	L	F	P	K	T	Y	Y	T	P	S	X	D	E	K	.	.	.	.	.	.	X	E	N
Template Known Secondary structure		T																		T	T	G	G	G	S															S	S												T	T						S	T	T											.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.							260	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	H	T	L	M	T	L	S	M	A	A	M	L	S	P	Q	V	D	V	R	F	A	T	L	C	H	D	L	G	K	G	L	T	P	P	E	L	W	P	R	H	H	G	H	G	P	A	G	V	K	L	V	E	Q	L	C	Q	R	L	R	V	P	N	E	I	R	D	L	A	R	L	V	A	E	F	H	D	L	I
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	R	N	I	P	W	V	E	E	N	F	G	E	V	D	R	F	Y	A	V	L	H	V	F	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	D	D	E	S	W	K	E	V	R	D	R	Y	S	L	R	R	N	L	I	N	E	I	R	H	V	E	K	S	A	P	A	L
Template Known Secondary structure														S													T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T														T			S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		309	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.
Predicted Secondary structure				.	.																																																																											.
Query SS confidence				.	.																																																																											.
Query Sequence		H	T	.	.	F	P	M	L	N	P	K	T	I	V	K	L	F	D	S	I	D	A	W	R	K	P	Q	R	V	E	Q	L	A	L	T	S	E	A	D	V	R	G	R	T	G	F	E	S	A	D	Y	P	Q	G	R	W	L	R	E	A	W	E	V	A	Q	S	V	P	T	K	A	V	V	E	A	G	F	K	.	G
Query Conservation				.	.																																																																											.
Alig confidence				.	.																			.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	X	L	S	E	R	V	P	A	S	F	V	Y	P	L	V	K	G	V	S	N	.	.	.	.	.	.	.	.	.	.	.	.	E	T	I	C	H	F	L	A	Y	L	S	G	E	K	E	G	L	F	K	S	Y	L	L	K	I	K	N	T	K	L	E	K	I	N	G	E	Y	L	I	R	K	G	I	T	S	G
Template Known Secondary structure						T	T	T			S	G	G	G					T	T				.	.	.	.	.	.	.	.	.	.	.	.								T	T																	T	S	T	T				S	S		S	S	T	T		S	S				S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.													.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	R	E	E	L	T	R	R	R	I	A	A	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	I	G	E	V	L	E	K	I	L	X	K	K	L	D
Template Known Secondary structure		S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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