Job Description P06961 Confidence 100.00% Date Thu Jan 5 10:59:31 GMT 2012 Rank 4 Aligned Residues 332 % Identity 25% Template c3aqnA_ PDB info PDB header:transferase Chain: A: PDB Molecule:poly(a) polymerase; PDBTitle: complex structure of bacterial protein (apo form ii) Resolution 3.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		M	K	I	Y	L	V	G	G	A	V	R	D	A	L	L	G	L	P	V	K	D	R	D	W	V	V	V	G	S	T	P	Q	E	M	L	D	A	G	Y	Q	.	.	Q	V	G	R	D	F	P	V	F	L	H	P	Q	T	H	E	E	Y	A	L	A	R	T	E	R	K	S	G	S	G	Y	T	G	F	T	C	Y	A
Query Conservation																																										.	.
Alig confidence																											.															.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	A	W	L	V	G	G	G	V	R	D	L	L	L	G	K	K	P	K	D	F	D	V	T	.	T	N	A	T	P	E	Q	V	R	K	L	F	R	N	C	R	L	V	G	R	R	F	R	L	A	H	V	M	F	G	P	E	I	I	E	V	A	T	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure								T									S	S			S						.		S	S								T	T	T	T	S							S	S							S	S										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.														.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																										.																									.	.	.
Query SS confidence																										.																									.	.	.
Query Sequence		A	P	D	V	T	L	E	D	D	L	K	R	R	D	L	T	I	N	A	L	A	Q	D	D	.	N	G	E	I	I	D	P	Y	N	G	L	G	D	L	Q	N	R	L	L	R	H	V	S	P	.	.	.	A	F	G	E	D	P	L	R	V	L	R	V	A	R	F	A	A	R	Y	A	H	L	G	F	R	I	A	D
Query Conservation																										.																									.	.	.
Alig confidence																										.																									.	.	.																			.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		N	I	F	G	S	I	E	E	D	A	Q	R	R	D	F	T	I	N	S	L	Y	Y	S	V	A	D	F	T	V	R	D	Y	V	G	G	M	K	D	L	K	D	G	V	I	R	L	I	G	N	P	E	T	R	Y	R	E	D	P	V	R	M	L	R	A	V	R	F	A	A	K	.	.	.	L	G	M	R	I	S	P
Template Known Secondary structure											T	T	S	S	S	B	S	G	G	G					T	T	T							S	S	T							T				B	S	S										T	T												.	.	.	S	S
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	L	A	L	M	R	E	M	T	H	A	G	E	L	E	H	L	T	P	E	R	V	W	K	E	T	E	S	A	L	T	T	R	N	P	Q	V	F	F	Q	V	L	R	D	C	G	A	L	R	V	L	F	P	E	I	D	A	L	F	G	V	P	A	P	A	K	W	H	P	E	I	D	T	G	I	H	T	L	M
Query Conservation
Alig confidence										.	.																																																														.	.
Template Conservation										.	.																																																														.	.
Template Sequence		E	T	A	E	P	I	P	R	.	.	L	A	T	L	L	N	D	I	P	P	A	H	L	F	E	E	S	L	K	L	L	Q	A	G	Y	G	Y	E	T	Y	K	L	L	C	E	Y	H	L	F	Q	P	L	F	P	T	I	T	R	Y	F	T	E	N	G	D	S	P	M	E	R	I	.	.	I	E	Q	V	L	K	N
Template Known Secondary structure					T					.	.		G	G	G	G	G	G	S														S	S	S												T	T											T	T			T	T	S								.	.
Template Predicted Secondary structure										.	.																																																														.	.
Template SS confidence
		215	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290
		235	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.											.									.	.	.
Query SS confidence												.											.									.	.	.
Query Sequence		T	L	S	M	A	A	M	L	S	P	.	Q	V	D	V	R	F	A	T	L	C	.	H	D	L	G	K	G	L	T	.	.	.	P	P	E	L	W	P	R	H	H	G	H	G	P	A	G	V	K	L	V	E	Q	L	C	Q	R	L	R	V	P	N	E	I	R	D	L	A	R	L	V	A	E	F	H	D	L	I	H
Query Conservation												.											.									.	.	.
Alig confidence												.											.									.	.	.																																															.
Template Conservation																																																																																	.
Template Sequence		T	D	T	R	I	H	N	D	M	R	V	N	P	A	F	L	F	A	A	M	F	W	Y	P	L	L	E	T	A	Q	K	I	A	Q	E	S	G	L	T	Y	H	D	A	F	A	L	A	M	N	D	V	L	D	E	A	C	R	S	L	A	I	P	K	R	L	T	T	L	T	R	D	I	W	Q	L	Q	L	R	M	.
Template Known Secondary structure								T	T													T															S																							S																				T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	P	M	L	N	P	K	T	I	V	K	L	F	D	S	I	D	A	W	R	K	P	Q	R	V	E	Q	L	A	L	T	S	E	A	D	V	R	G	R	T	G	F	E	S	A	D	Y	P	Q
Query Conservation
Alig confidence		.	.																		.	.	.
Template Conservation		.	.																		.	.	.
Template Sequence		.	.	S	R	R	Q	G	K	R	A	W	K	L	L	E	H	P	K	F	.	.	.	R	A	A	Y	D	L	L	A	L	R	A	E	V	E	R	N	A	E	L	Q	R	L	V	K	W	W	G	E
Template Known Secondary structure		.	.	T	S				T	T								T	T		.	.	.														T	T
Template Predicted Secondary structure		.	.																		.	.	.
Template SS confidence
				370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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