Job Description P06961 Confidence 100.00% Date Thu Jan 5 10:59:31 GMT 2012 Rank 2 Aligned Residues 334 % Identity 24% Template c1vfgB_ PDB info PDB header:transferase/rna Chain: B: PDB Molecule:poly a polymerase; PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		M	K	I	Y	L	V	G	G	A	V	R	D	A	L	L	G	L	P	V	K	D	R	D	W	V	V	V	G	S	T	P	Q	E	M	L	D	A	G	Y	Q	.	.	.	.	.	.	Q	V	G	R	D	F	P	V	F	L	H	P	Q	T	H	E	E	Y	A	L	A	R	T	E	R	K	S	G	S	G	Y	T	G	F
Query Conservation																																										.	.	.	.	.	.
Alig confidence																														.												.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	A	Y	I	V	G	G	V	V	R	D	I	L	L	G	K	E	V	W	D	V	D	F	V	V	E	G	.	N	A	I	E	L	A	K	E	L	A	R	R	H	G	V	N	V	H	P	F	P	E	F	G	T	A	H	L	K	I	G	K	L	K	L	E	F	A	T	.	.	.	.	.	.	.	.	.	.	.	A
Template Known Secondary structure								T								T	T				S							S	S	.														T							T	T	T	T							T	T								.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.												.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.																						.
Query SS confidence																																	.	.	.	.																						.
Query Sequence		T	C	Y	A	A	P	D	V	T	L	E	D	D	L	K	R	R	D	L	T	I	N	A	L	A	Q	D	D	N	G	E	.	.	.	.	I	I	D	P	Y	N	G	L	G	D	L	Q	N	R	L	L	R	H	V	S	P	.	A	F	G	E	D	P	L	R	V	L	R	V	A	R	F	A	A	R	Y	A	H	L	G
Query Conservation																																	.	.	.	.																						.
Alig confidence																																	.	.	.	.																						.																				.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		R	R	E	T	V	E	P	A	S	L	K	E	D	L	I	R	R	D	F	T	I	N	A	M	A	I	S	V	N	L	E	D	Y	G	T	L	I	D	Y	F	G	G	L	R	D	L	K	D	K	V	I	R	V	L	H	P	V	S	F	I	E	D	P	V	R	I	L	R	A	L	R	F	A	G	R	L	.	.	.	N
Template Known Secondary structure			S														T	S	S	B	G	G	G	S							G	G	G	T	T					S	S								T	T				B	S	S	T	T						T	T													.	.	.	T
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	I	A	D	E	T	L	A	L	M	R	E	M	T	H	A	G	E	L	E	H	L	T	P	E	R	V	W	K	E	T	E	S	A	L	T	T	R	N	P	Q	V	F	F	Q	V	L	R	D	C	G	A	L	R	V	L	F	P	E	I	D	A	L	F	G	V	P	A	P	A	K	W	H	P	E	I	D	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	L	S	R	S	T	E	K	L	L	K	Q	A	V	N	L	G	L	L	K	E	A	P	R	G	R	L	I	N	E	I	K	L	A	L	R	E	D	R	F	L	E	I	L	E	L	Y	R	K	Y	R	V	L	E	E	I	I	E	G	F	Q	W	N	E	K	V	L	Q	K	L	Y	A	L	R	K	V	V	D	W
Template Known Secondary structure																		T	T	G	G	G	T	S																S	S											T	T						S	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	T	L	M	T	L	S	M	A	A	M	L	S	P	Q	V	D	V	R	F	A	T	L	C	H	D	L	G	K	G	L	T	P	P	E	L	W	P	R	H	H	G	H	G	P	A	G	V	K	L	V	E	Q	L	C	Q	R	L	R	V	P	N	E	I	R	D	L	A	R	L	V	A	E	F	H	D	L	I	H
Query Conservation
Alig confidence					.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	L	.	.	.	.	E	F	S	E	E	R	I	D	Y	G	W	L	Y	L	L	I	L	I	S	N	L	D	Y	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	H	F	L	E	E	M	S	A	P	S	W	V	R	E	T	Y	K	F	M	K	F	K	L	G	S	L	K
Template Known Secondary structure					.	.	.	.		G	G	G	S															S			S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T
Template Predicted Secondary structure					.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.																				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.
Predicted Secondary structure				.	.																																																																										.
Query SS confidence				.	.																																																																										.
Query Sequence		T	F	.	.	P	M	L	N	P	K	T	I	V	K	L	F	D	S	I	D	A	W	R	K	P	Q	R	V	E	Q	L	A	L	T	S	E	A	D	V	R	G	R	T	G	F	E	S	A	D	Y	P	Q	G	R	W	L	R	E	A	W	E	V	A	Q	S	V	P	T	K	A	V	V	E	A	G	F	K	.	G	V
Query Conservation				.	.																																																																										.
Alig confidence				.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																																.
Template Conservation																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		E	E	L	K	K	A	K	E	N	Y	E	V	Y	R	L	L	K	P	L	.	.	.	.	.	.	.	H	T	S	V	L	L	L	L	M	L	E	E	.	.	.	.	.	.	.	.	E	L	K	E	K	I	K	L	Y	L	E	K	L	R	K	V	K	L	P	L	K	R	E	I	M	N	K	I	K	L	A	A	A	L
Template Known Secondary structure					T	T		S	S	S	T					T	T	G	G	G	.	.	.	.	.	.	.	G	T							T	T	S	G	.	.	.	.	.	.	.	.	G	G															S				T
Template Predicted Secondary structure																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320								.	.	.	.	.	.	.	.	.	330	.	.									.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		387
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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