Job Description P06961 Confidence 100.00% Date Thu Jan 5 10:59:31 GMT 2012 Rank 5 Aligned Residues 262 % Identity 25% Template c1ou5A_ PDB info PDB header:translation, transferase Chain: A: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of human cca-adding enzyme Resolution 3.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.								.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		M	K	I	Y	L	V	G	G	A	V	R	D	A	L	L	G	L	P	V	K	D	R	D	W	V	V	V	G	S	T	P	Q	E	M	L	D	A	G	Y	Q	Q	V	.	.	.	.	.	.	.	G	R	D	F	P	V	F	L	H	P	Q	T	H	E	E	Y	A	L	A	R	T	E	R	K	S	G	S	G	Y	T	G
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence																											.																	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																											.																																															.	.	.	.	.	.	.	.
Template Sequence		H	E	L	R	I	A	G	G	A	V	R	D	L	L	N	G	V	K	P	Q	D	I	D	F	A	.	T	T	A	T	P	T	Q	M	K	E	M	F	Q	S	A	G	I	R	M	I	N	N	R	G	E	K	H	G	T	I	T	A	R	L	H	E	E	N	F	E	I	T	T	L	R	I	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	T	T	T						T	S			S	S					.		S	S										T	T	T	T			B						T	T								T	T	T	T									S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.																																															.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		F	T	C	Y	A	A	P	D	V	T	L	E	D	D	L	K	R	R	D	L	T	I	N	A	L	A	Q	D	D	N	G	E	I	I	D	P	Y	N	G	L	G	D	L	Q	N	R	L	L	R	H	V	S	P	.	.	.	A	F	G	E	D	P	L	R	V	L	R	V	A	R	F	A	A	R	Y	A	H	L	G	F
Query Conservation																																																							.	.	.
Alig confidence		.	.	.	.	.	.																																																.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	F	T	T	D	W	Q	K	D	A	E	R	R	D	L	T	I	N	S	M	F	L	G	F	D	G	T	L	F	D	Y	F	N	G	Y	E	D	L	K	N	K	K	V	R	F	V	G	H	A	K	Q	R	I	Q	E	D	Y	L	R	I	L	R	Y	F	R	F	Y	G	R	I	V	D	K	P	G
Template Known Secondary structure		.	.	.	.	.	.	S	S			S	S			G	G	G	S	S	B	G	G	G	S					S	S		B				S	S	S					T	T	T	T				B	S	S	T	T	T	T	T	S	S	S		T	T												S		S	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	D	E	T	L	A	L	M	R	E	M	T	H	A	G	E	L	E	H	L	T	P	E	R	V	W	K	E	T	E	S	A	L	T	T	R	N	P	Q	V	F	F	Q	V	L	R	D	C	G	A	L	R	V	L	F	P	E	I	D	A	L	F	G	V	P	A	P	A	K	W	H	P	E	I	D	T	G	I
Query Conservation
Alig confidence														.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	D	P	E	T	L	E	A	I	A	E	.	.	N	A	K	G	L	A	G	I	S	G	E	R	I	W	V	E	L	K	K	I	L	V	G	N	H	V	N	H	L	I	H	L	I	Y	D	L	D	V	A	P	Y	I	G	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	A	S	L	E
Template Known Secondary structure														.	.	S		T	T	G	G	G	S		S												T	S	T	T											T	T		G	G	G	G	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure														.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	L	M	T	L	S	M	A	A	M	L	S	P	Q	V	D	V	R	F	A	T	L	C	H	D	L	G	K	G	L	T	P	P	E	L	W	P	R	H	H	G	H	G	P	A	G	V	K	L	V	E	Q	L	C	Q	R	L	R	V	P	N	E	I	R	D	L	A	R	L	V	A	E	F	H	D	L	I	H	T
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	D	K	V	S	K	N	V	D	G	F	S	P	K	P	V	T	L	L	A	S	L	F	K	V	Q	D	D	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	D	L	R	L	K	I	A	K	E	E	K	N	L	G	L	F	I	V	K	N	R	K	D	L	I	K
Template Known Secondary structure											T	T	S									G	G	G			S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T									T	T	T	T	T	T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.																						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		311	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	M	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	D	S	S
Template Known Secondary structure				S	S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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