Job Description P06961 Confidence 100.00% Date Thu Jan 5 10:59:31 GMT 2012 Rank 1 Aligned Residues 344 % Identity 26% Template c1miyB_ PDB info PDB header:translation, transferase Chain: B: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp Resolution 3.52 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		M	K	I	Y	L	V	G	G	A	V	R	D	A	L	L	G	L	P	V	K	D	R	D	W	V	V	V	G	S	T	P	Q	E	M	L	D	A	G	Y	Q	.	.	Q	V	G	R	D	F	P	V	F	L	H	P	Q	T	H	E	E	Y	A	L	A	R	T	E	R	K	S	G	S	G	Y	T	G	F	T	C	Y	A
Query Conservation																																										.	.
Alig confidence																														.												.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																														.																																						.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	A	Y	F	V	G	G	A	V	R	D	L	L	L	G	R	P	I	G	D	V	D	I	A	T	S	A	.	L	P	E	D	V	M	A	I	F	P	K	T	I	D	V	G	S	K	H	G	T	V	V	V	V	H	K	G	K	A	Y	E	V	T	T	F	K	.	.	.	.	.	.	.	.	.	T	D	G	S	V
Template Known Secondary structure								S									T											S	S	.									S	S	S						T	T	T	T							T	T										.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.										.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		A	P	D	V	T	L	E	D	D	L	K	R	R	D	L	T	I	N	A	L	A	Q	D	D	N	G	E	I	I	D	P	Y	N	G	L	G	D	L	Q	N	R	L	L	R	H	V	S	P	.	.	.	A	F	G	E	D	P	L	R	V	L	R	V	A	R	F	A	A	R	Y	A	H	L	G	F	R	I	A	D	E
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.																				.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		T	F	V	R	S	L	E	E	D	L	K	R	R	D	F	T	M	N	A	I	A	M	D	E	Y	G	T	I	I	D	P	F	G	G	R	E	A	I	R	R	R	I	I	R	T	V	G	E	A	E	K	R	F	R	E	D	A	L	R	M	M	R	A	V	R	F	V	S	E	L	.	.	.	G	F	A	L	A	P	D
Template Known Secondary structure					S							T	T	S	S	B	G	G	G	S					T	T			B			S	S	S								T				B	S	S										T	T												T	.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	L	M	R	E	M	T	H	A	G	E	L	E	H	L	T	P	E	R	V	W	K	E	T	E	S	A	L	T	T	R	N	P	Q	V	F	F	Q	V	L	R	D	C	G	A	L	R	V	L	F	P	E	I	D	A	L	F	G	V	P	A	P	A	K	W	H	P	E	I	D	T	G	I	H	T	L	M	T
Query Conservation
Alig confidence									.	.																																									.																							.	.	.	.	.	.	.	.
Template Conservation									.	.																																									.																							.	.	.	.	.	.	.	.
Template Sequence		T	E	Q	A	I	V	Q	.	.	N	A	P	L	L	A	H	I	S	V	E	R	M	T	M	E	M	E	K	L	L	G	G	P	F	A	A	R	A	L	P	L	L	A	E	T	G	L	N	A	.	Y	L	P	G	L	A	G	K	E	K	Q	L	R	L	A	A	A	Y	R	W	P	W	.	.	.	.	.	.	.	.
Template Known Secondary structure									.	.		G	G	G	G	G	G	S													T	T		S	S											S	T	T	T	T	.	S	S	T	T		T	T								G	G	G	S		G	G	G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.																																									.																							.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	M	A	A	M	L	S	P	Q	V	D	V	R	F	A	T	L	C	H	D	L	G	K	G	L	T	P	P	E	L	W	P	R	H	H	G	H	G	P	A	G	V	K	L	V	E	Q	L	C	Q	R	L	R	V	P	N	E	I	R	D	L	A	R	L	V	A	E	F	H	D	L	I	H	T	F	P	M	L	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	A	A	R	E	E	R	W	A	L	L	C	H	A	L	G	V	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	P	F	L	R	A	W	K	L	P	N	K	V	V	D	E	A	G	A	I	L	T	A	L	A	D	I	P	R	P	E	A	W	T
Template Known Secondary structure		.	.	.	.	.	.	.			S													T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T																					S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.		.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																																																				.				.
Query SS confidence																																																																				.				.
Query Sequence		P	K	T	I	V	K	L	F	D	S	I	D	A	W	R	K	P	Q	R	V	E	Q	L	A	L	T	S	E	A	D	V	R	G	R	T	G	F	E	S	A	D	Y	P	Q	G	R	W	L	R	E	A	W	E	V	A	Q	S	V	P	T	K	A	V	V	E	A	.	G	F	K	.	G	V	E	I	R	E	E	L	T
Query Conservation																																																																				.				.
Alig confidence													.	.	.	.	.	.	.																																																	.				.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		N	E	Q	L	F	S	A	G	L	E	R	.	.	.	.	.	.	.	A	L	S	V	E	T	V	R	A	A	F	T	G	A	P	P	G	P	W	H	E	K	L	R	R	R	F	A	S	L	P	I	K	T	K	G	E	L	A	V	N	G	K	D	V	I	E	W	V	G	K	P	A	G	P	W	V	K	E	A	L	D
Template Known Secondary structure													.	.	.	.	.	.	.													S			S											T	T	T	S	S		S	S	S	T	T		S	S										T			S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.								310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		394	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	R	I	A	A	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	W	R	A	V	V	N
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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