Return to main results Retrieve Phyre Job Id

Job DescriptionP39301
Confidence92.35%DateThu Jan 5 11:59:07 GMT 2012
Rank1Aligned Residues265
% Identity11%Templatec3qnqD_
PDB info PDB header:membrane protein, transport proteinChain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Resolution3.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   198.200.........210.........220.........230.........240.........250.........260.........270.......
Predicted Secondary structure 















Query SS confidence 















































































Query Sequence  FASWIAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAMAGKVHWTVYILQTGFSFA
Query Conservation      
   
 
  
  
 
 
  



 
 

 
  
   


 

  
     
                 
   
 
 
Alig confidence 














































.




























.

Template Conservation     
            

             

   
   
   
  .         
   
               .  
Template Sequence  STEIYRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRL. IFEHTTFGSIHNVVGKLLQEPLSILGASL. WG
Template Known Secondary structure  TT
S



TTS
.TSSS
STTTS.
Template Predicted Secondary structure 









.


.
Template SS confidence 















































































   156...160.........170.........180.........190.........200.. .......210.........220.........230. ..
 
   278.280.........290.. .......300.........310.........320.........330.........340......
Predicted Secondary structure  ...........









Query SS confidence 














. . . . . . . . . . .





















































Query Sequence  VAIFIITQGVRMFVA. . . . . . . . . . . ELSEAFNGISQRLIPGAVLAIDCAAIYSFAPNAVVWGFMWGTIGQLIAVGILVA
Query Conservation 
 
 


 





 ...........

 


 


 

 
 
  


 
  
  

 

 



 
 
      
    
Alig confidence 














...........





















































Template Conservation    
   
   
   


           
                                 

 
  

  

     
Template Sequence  AVIAVILVHVLWACGIHGATIVGGVMSPIWLSLMDQNRIAFQAGQDVPNTITAQFFDLWIYMGGSGATLALVVGMLLFAR
Template Known Secondary structure  TTS
TTT




S

TS
SSSSST

Template Predicted Secondary structure 









Template SS confidence 















































































   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   347..350.........360.........370.........380.........390.........400.........410.........420......
Predicted Secondary structure 












Query SS confidence 















































































Query Sequence  CGSSILIIPGFIPMFFSNATIGVFANHFGGWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFS
Query Conservation 
     


  
  

     




  

  



 
 
 
 
            
        
              
Alig confidence 















































































Template Conservation   
  
     
    






  

      

  

 
   
   
                       
        
Template Sequence  SQQLKSLGRLSIAPGIFNINEMVTFGMPIVMNPLLLIPFIVVPVVLTIVSYFAMEWGLVARPSGAAVTWTTPILFSGYLG
Template Known Secondary structure  STSTT

TT
TT
TTTTTSS



S



TTS
T
Template Predicted Secondary structure 












Template SS confidence 















































































   314.....320.........330.........340.........350.........360.........370.........380.........390...
 
   427. .430.........440.........450.........460....
Predicted Secondary structure  .......






Query SS confidence 

. . . . . . .



































Query Sequence  IG. . . . . . . IAFMAVIIVIALAYMFFAGRALRAEEDAEKQLAEQS
Query Conservation    .......      
                          
  
Alig confidence 

.......



































Template Conservation 
       
  

  

   

  
 
   
     
        
Template Sequence  SGGKISGVILQLVNFALAFVIYLPFLKIWDKQKIAEEKGEAAAEN
Template Known Secondary structure  TTT
TTTTT





Template Predicted Secondary structure 




Template SS confidence 












































   394.....400.........410.........420.........430........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions