|   |
28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | H | R | Q | A | A | V | L | I | P | I | V | R | R | P | Q | P | G | L | L | L | T | Q | R | S | I | H | L | R | K | H | A | G | Q | V | A | F | P | G | G | A | V | D | D | T | D | A | S | A | I | A | A | A | L | R | E | A | E | E | E | V | A | I | P | P | S | A | V | E | V | I | G | V | L | P | P | V | D | S | V |
Query Conservation |   |
  |   |
|   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|   |   |
|   |   |
|   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
| . | . |
|
|
|   |   |
|   |   |   | . | . |   |   |   |
|   |
|   |
|
|
|
|   |
|
|   |
|
|
| . |   |   |   |
|
|   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | A | S | R | L | Y | T | L | V | L | V | L | Q | P | Q | R | . |
. |
V | L | L | G | M | K | K | R | G | . |
. |
F | G | A | G | R | W | N | G | F | G | G | K | V | Q | E | G | E | T | . |
I | E | D | G | A | R | R | E | L | Q | E | E | S | G | L | T | V | D | A | L | H | K | V | G | Q | I | V | F | E | F | V | G |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |
|  |  |
| S | S |  | . | . |  |  |  |  |  |  | S | S | S | . | . | S | S | B | T |
|  |  |
| B |
|
| B |
|
| T | T |
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
| B | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . |  |  |  |  |  |  |
|
|
| . | . |
|
|
|
|
|  |  |
|
|
|
|  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
. | . | 20 | . | . | . | . | . | . | |
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | |
|
|
|
. | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | G | Y | Q | V | T | P | V | V | G | I | I | P | P | D | L | P | Y | R | A | S | E | D | E | V | S | A | V | F | E | M | P | L | A | Q | A | L | . |
. |
. |
. |
H | L | G | R | Y | H | P | L | D | I | Y | R | R | G | D | S | H | R | V | W | L | S | W | Y | E | Q | Y | F | V | W | G | M | T |
Query Conservation |   |
  |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|   |   |
|
| . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
E | P | E | L | M | D | V | H | V | F | C | T | D | S | . |
I | Q | G | T | P | V | E | S | D | E | M | R | P | C | W | F | Q | L | D | Q | I | P | F | K | D | M | W | P | D | D | S | Y | W | F | P | L | L | L | Q | K | K | K | F | H | G | Y | F | K | F | Q | G | Q | D | T | I | L | D | Y | T |
Template Known Secondary structure |   |
| S |
|  |  |  |  |  |  |  |
|
|
|
| . | B |
| S |
|
|
|
|
| S | S |  |  |  |  |  |  |  | T | T |
|
|
| S | T | T | T |
| S | S |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  | S | S | S | S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | |
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
  |