Job Description P43337 Confidence 94.84% Date Thu Jan 5 12:02:19 GMT 2012 Rank 83 Aligned Residues 123 % Identity 20% Template c3p5tE_ PDB info PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex Resolution 2.70 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	S	R	F	Q	L	L	R	P	Q	I	N	R	E	T	L	N	H	R	Q	A	A	V	L	I	P	I	V	R	R	P	Q	P	G	L	L	L	T	Q	R	S	I	H	L	R	K	H	A	G	Q	V	A	F	P	G	G	A	V	D	D	T	D	A	S	A	I	A	A	A	L	R	E	A	E	E	E	V	A	I
Query Conservation
Alig confidence											.																																			.	.	.	.	.	.															.
Template Conservation											.																																			.	.	.	.	.	.															.
Template Sequence		V	A	A	R	F	Q	R	M	R	.	E	E	F	D	K	I	G	M	R	R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	G	T	T	.	.	.	.	.	.	F	F	K	L	P	G	G	E	L	N	P	G	E	D	.	E	V	E	G	L	K	R	L	M	T	E	I	L	G	V
Template Known Secondary structure											.						S		S													T	T										T	T	T	.	.	.	.	.	.					S						T	T			.
Template Predicted Secondary structure											.																																			.	.	.	.	.	.															.
Template SS confidence
		60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		91	.	.	.	.			.	.	.	.	100	.	.														.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure							.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	S	A	V	.	.	E	V	I	G	V	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	D	S	V	T	G	Y	Q	V	T	P	V	V	G	I	I	P	P	D	L	P	Y	R	A	S	E	D	E	V	S	A	V	F	E	M	P	L	A	Q	A
Query Conservation							.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.								.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																								.	.
Template Sequence		L	Q	D	W	V	I	D	D	C	I	G	N	W	W	R	P	N	F	E	P	P	Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A	L	F	A	V	P	K	.	.	N	Y	K	L	V	A	A	P	L	F	E	L
Template Known Secondary structure																		S	S	S	S			B	S	S			T	T		S	S		S												S	S							T	.	.	T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions