 |
Job Description | P45568 | Confidence | 93.68% | Date | Thu Jan 5 12:03:20 GMT 2012 |
Rank | 222 | Aligned Residues | 113 |
% Identity | 12% | Template | c3l6dB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:putative oxidoreductase; |
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
|
Resolution | 1.90 Å |
|
 |
  |   |
1 | . | |
. | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
| . |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | . |
Q | L | T | I | L | G | S | T | G | S | I | G | C | S | T | L | D | V | V | R | H | N | P | E | H | F | R | V | V | A | L | V | A | G | K | N | V | T | R | M | V | E | Q | C | L | E | F | S | P | R | Y | A | V | M | D | D | E | A | S | A | K | L | L | K | T | M | L | Q | Q | Q | G | S | R | T | E | V | L |
Query Conservation |   |
|
| . |
|
|   |
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|   |   |   |   |
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |   |
|   |
|
|   |   |   |
|   |
|   |   |
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |
|
|
|   |
|
|
|   | . |
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   | . | . |
Template Sequence |   |
F | E | F | D | V | S | V | I | G | L | . |
G | A | X | G | T | I | X | A | Q | V | L | L | K | Q | G | K | R | V | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | W | N | R | S | P | G | K | A | A | A | L | V | A | A | G | A | H | L | C | E | S | V | K | . |
. |
Template Known Secondary structure |   |
| S |
| S |  |  |  |  |
|
| . | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |
| S | S |  |  | . | . |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | |
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
|
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | G | Q | Q | A | A | C | D | M | A | A | L | E | D | V | D | Q | V | M | A | A | I | V | G | A | A | G | L | L | P | T | L | . |
. |
. |
. |
A | A | I | R | A | G | K | T | I | L | L | A | N | K | E | S | L | V | T | C | G | R | L | F | M | D | A | V | K | Q | S | K | A | Q | L | L | P | V |
Query Conservation |   |
  |
|   |
|   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|   |
|   |   |
|
|   |   |
|
| . | . | . | . |   |
|
|   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |
|   |   |
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . |
|   |   |   |   | . | . |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
A | A | L | S | A | . |
. |
S | P | A | T | I | F | V | L | L | D | N | H | A | T | H | E | V | L | G | X | P | G | V | A | R | A | L | A | H | R | T | I | V | D | Y | T | T | N | A | Q | D | E | G | L | A | L | Q | G | L | V | N | Q | A | G | G | H | Y | V | K | G |
Template Known Secondary structure |   |
. | . | . | . | . | . | . |  |  |  |  |  | . | . | S | S |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  | T | T |
|  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . |  |  |  |  |
| . | . |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
61 | . | . | . | . | |
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|