Job Description P45568 Confidence 92.84% Date Thu Jan 5 12:03:20 GMT 2012 Rank 248 Aligned Residues 133 % Identity 20% Template c2v6bB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	Q	L	T	I	L	G	S	T	G	S	I	G	C	S	T	L	D	V	V	R	H	N	P	E	H	F	R	V	V	A	L	V	A	G	K	N	V	T	R	M	V	E	Q	C	L	E	F	S	P	R	Y	A	V	M	D	D	E	A	S	A	K	L	L	K	T	M	L	Q	Q	Q	G	S	R	T	E	V	L	S
Query Conservation
Alig confidence				.							.																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.							.																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	.	V	G	V	V	G	T	.	G	F	V	G	S	T	A	A	F	A	L	V	L	R	G	S	C	S	E	L	V	L	.	.	V	D	R	D	E	D	R	A	Q	A	E	A	E	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	A	A	P	V	S	H	G	T	R	V	W	H
Template Known Secondary structure				.							.	S														T			S					.	.			S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T			G	G	G
Template Predicted Secondary structure				.							.																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.		.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																		.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		G	Q	Q	A	A	C	D	M	A	A	L	E	D	V	D	Q	V	M	A	A	I	V	G	A	A	G	L	L	P	T	L	A	A	I	R	A	G	K	T	I	L	L	A	N	K	E	S	L	V	T	C	G	R	L	F	M	D	A	V	K	Q	S	K	A	Q	L	L	.	.	P	V	D	S	E	H	N	A	I	F	Q
Query Conservation																																																																					.	.
Alig confidence					.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation					.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	H	.	.	.	.	.	S	E	L	A	D	A	Q	V	V	I	L	T	A	G	A	E	S	R	L	D	L	L	E	K	.	.	.	.	.	.	.	.	.	.	.	N	A	D	I	F	R	E	L	V	P	Q	I	T	R	A	A	P	D	A	V	L	L	V	T	S	N	P	V	D	L	L	T	D	L	A	T	Q
Template Known Secondary structure				G	.	.	.	.	.	G	G	G	T	T		S																		.	.	.	.	.	.	.	.	.	.	.																	T	T	S						S	S	S
Template Predicted Secondary structure					.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.												110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	Q	P	I	Q	H	N	L	G	Y	A	D	L	E	Q	N	G	V	V	S	I	L	L	T	G	S
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	V	I	G	S	G	T
Template Known Secondary structure				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.																	.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions