 |
Job Description | P45568 | Confidence | 93.30% | Date | Thu Jan 5 12:03:20 GMT 2012 |
Rank | 233 | Aligned Residues | 77 |
% Identity | 17% | Template | c2bruB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha; |
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
|
Resolution | UNK |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | Q | L | T | I | L | G | S | T | G | S | I | G | C | S | T | L | D | V | V | R | H | N | P | E | H | F | R | V | V | A | L | V | A | G | K | N | V | T | R | M | V | E | Q | C | L | E | F | S | P | R | Y | A | V | M | D | D | E | A | S | A | K | L | L | K | T | M | L | Q | Q | Q | G | S | R | T | E | V | L | S | G |
Query Conservation |   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|   |   |   |   |
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |   |
|   |
|
|   |   |   |
|   |
|   |   |
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|   |
|
|
|   | . |
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|   |   |
|   | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
A | K | V | M | V | I | G | A | . |
G | V | A | G | L | A | A | I | G | A | A | N | S | L | G | A | I | V | R | . |
. |
. |
. |
. |
A | F | D | T | R | P | E | V | K | E | Q | V | Q | S | M | G | A | E | F | L | E | L | D | M | S | D | A | F | I | K | A | E | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|  |  |  |  |  | S | T | . | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  | . | . | . | . | . |  |  |
| S | S | T |  |  |  |  |  |  |  |  | T | T |
|  |  |
|
|
|
|
|
| T | T |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1166 | . | . | . | 1170 | . | . | . | |
. | . | . | . | . | . | 1180 | . | . | . | . | . | . | . | . | . | 1190 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . | . | . | . | . | . | . | 1220 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | Q | A | A | C | D | M | A | A | L | E | D | V | D | Q | V | M | A | A | I |
Query Conservation |   |
  |
|   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |
|   |   |   |   |   |   | . | . |
|
|
|
|
|   |   |
|
Template Sequence |   |
. |
E | L | F | A | A | Q | A | K | E | . |
. |
V | D | I | I | V | T | T | A |
Template Known Secondary structure |   |
. |  |  |  |  |  |  |  |  |  | . | . |
| S |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
. |  |  |  |  |  |  |  |  |  | . | . |
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
1240 | . | . | . | . | . | . | . | . | |
|
. | 1250 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|