|   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | T | P | A | A | P | M | V | D | S | L | I | A | R | V | G | V | M | A | R | G | N | A | I | T | L | P | V | C | G | R | D | V | K | F | T | L | E | V | L | R | G | D | S | V | E | K | T | S | R | V | W | S | G | N | E | R | D | Q | E | L | L | T | E | D | A | L | D | D | L | I | P | S | F | L | L | T | G | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|   |   |   |
|
|   |   |   |
|
|   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|
|
|
|   |   |
| . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|   |   |
|
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |
Template Sequence |   |
A | P | E | G | P | G | P | S | G | G | A | Q | G | G | S | I | H | S | G | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | A | A | V | H | N | V | P | L | S | V | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
I | R | P | L | P | S | V | L | D | P | A | K | V | Q | S | L | V | D | T | I | R | E | D | P | D |
Template Known Secondary structure |   |
| S |
|
|
|
|
|
| S |
|
| T | T |
|
| T | T | S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  | G | G | G |  | . | . | . | . | . | . | . | . | . |  |
|
| S |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |
|
|
|  |  |
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
  |   |
102 | . | . | . | . | . | . | . | 110 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
. | . | . | . | . | . | . | 140 | . | . | . | . | . | |
|
. | . | . | . | 150 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |
|
|
|  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | T | P | A | F | G | R | R | V | . |
. |
. |
. |
. |
. |
S | G | V | I | E | I | A | D | G | S | R | R | R | K | A | A | A | L | T | E | S | D | . |
Y | R | V | L | V | G | E | L | D | D | E | Q | M | . |
. |
A | A | L | S | R | L | G | N | D | Y |
Query Conservation |   |
  |   |
|   |
|
|
|   |   | . | . | . | . | . | . |   |
|   |
|
|
|
|   |
|   |
|
|   |
|
|   |   |   |   |
|   |   | . |
|   |   |   |
|   |   |
|   |
|   |   |
| . | . |   |   |   |   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |
|
|   |   |   |
|
|
|   |
|   |   |   |   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |
Template Sequence |   |
S | V | P | P | I | D | V | L | W | I | K | G | A | Q | G | G | D | Y | F | Y | S | F | G | G | C | H | R | Y | A | A | Y | Q | Q | L | Q | R | E | T | I | P | A | K | L | V | Q | S | T | L | S | D | L | R | V | Y | L | G | A | S | T | P | D | L | Q |
Template Known Secondary structure |   |
S |
|
|
|  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | S | S | S |
|
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |