Job Description P62558 Confidence 51.95% Date Thu Jan 5 12:07:38 GMT 2012 Rank 283 Aligned Residues 60 % Identity 15% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.		.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																		.	.		.														.
Query SS confidence																		.	.		.														.
Query Sequence		D	D	E	Q	M	A	A	L	S	R	L	G	N	D	Y	R	.	.	P	.	T	S	A	Y	E	R	G	Q	R	Y	A	S	R	.	L	Q	N	E	F	A	G	N	I	S	A	L	A	D	A	E	N	I	S	R	K	I	I	T	R	C	I	N	T	A
Query Conservation																		.	.		.														.
Alig confidence																		.	.		.														.
Template Conservation
Template Sequence		P	V	E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q	I	E	N	K	A
Template Known Secondary structure		T	T																T	T	S	S		T	T	T	T					T	T	S	S	T	T	S	S										T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions