Job Description P24241 Confidence 100.00% Date Thu Jan 5 11:41:33 GMT 2012 Rank 1 Aligned Residues 382 % Identity 14% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure															.																																				.	.	.	.																											.
Query SS confidence															.																																				.	.	.	.																											.
Query Sequence		V	G	K	P	K	L	T	L	R	R	I	G	A	.	G	I	L	D	A	L	I	G	T	M	S	P	L	I	P	A	I	I	G	G	S	M	V	K	L	L	A	M	I	L	E	M	S	G	V	.	.	.	.	L	T	K	G	S	P	T	L	T	I	L	N	V	I	G	D	G	A	F	F	F	L	P	L	M	V	.
Query Conservation															.																																				.	.	.	.																											.
Alig confidence															.																																				.	.	.	.																											.
Template Conservation
Template Sequence		E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V
Template Known Secondary structure		T	T	T	S																					G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
					166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure		.	.	.																																																							.	.
Query SS confidence		.	.	.																																																							.	.
Query Sequence		.	.	.	A	A	S	A	A	I	K	F	K	T	N	M	S	L	A	I	A	I	A	G	V	L	V	H	P	S	F	I	E	L	M	A	K	A	A	Q	G	E	H	V	E	F	A	L	I	P	V	T	A	V	K	Y	T	Y	.	.	T	V	I	P	A	L	V	M	T	W	C	L	S	Y	I	E	R	W	V	D	S
Query Conservation		.	.	.																																																							.	.
Alig confidence		.	.	.																																																							.	.
Template Conservation
Template Sequence		F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q
Template Known Secondary structure													T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		241										.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Query Sequence		I	.	.	.	.	.	.	.	.	.	T	P	A	V	T	K	N	F	L	K	P	M	L	I	V	L	I	A	A	P	L	A	I	L	L	I	G	P	I	G	I	W	I	G	S	A	I	S	A	L	V	Y	T	I	H	G	Y	.	.	.	.	.	.	L	G	W	L	S	V	A	I	M	G	A	L	W	P	L	L	V
Query Conservation			.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W
Template Known Secondary structure		T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		306	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.															.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	G	M	H	R	V	F	T	.	.	.	.	.	.	P	T	I	I	Q	T	I	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	K	E	G	M	V	M	P	S	E	I	G	A	N	L	S	L	G	G	S	S	L	A	V	A	W	K	T	K	N	P	E	L	R	Q	T	A	L	A	A	A
Query Conservation											.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S	I
Template Known Secondary structure			T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T													S										T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.					.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440
Predicted Secondary structure																		.	.	.	.																																																				.
Query SS confidence																		.	.	.	.																																																				.
Query Sequence		A	S	A	I	M	A	G	I	S	E	P	A	L	Y	G	V	.	.	.	.	A	I	R	L	K	R	P	L	I	A	S	L	I	S	G	F	I	C	G	A	V	A	G	M	A	G	L	A	S	H	S	M	A	A	P	G	L	F	T	S	V	Q	F	F	D	P	A	N	P	M	S	.	I	V	W	V	F	A	V	M
Query Conservation																		.	.	.	.																																																				.
Alig confidence							.											.	.	.	.																																																				.
Template Conservation							.
Template Sequence		A	P	G	I	F	.	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q
Template Known Secondary structure						T	.	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure							.
Template SS confidence
		326	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	V	V	L	S	F	I	L	T	L	L	L	G	F	E	D	I	P	V	E	E	A	A	A	Q	A	R	K	Y	Q	S	V	Q
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		L	V	N	F	A	L	A	F	V	I	Y	L	P	F	.	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure																.													T	T
Template Predicted Secondary structure																.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.