Job Description P24241 Confidence 4.48% Date Thu Jan 5 11:41:33 GMT 2012 Rank 79 Aligned Residues 289 % Identity 14% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																						.																																												.
Query SS confidence																						.																																												.
Query Sequence		L	N	V	I	G	D	G	A	F	F	F	L	P	L	M	V	A	A	S	A	.	A	I	K	F	K	T	N	M	S	L	A	I	A	I	A	G	V	L	V	H	P	S	F	I	E	L	M	A	K	A	A	Q	G	E	H	V	E	F	A	L	I	P	V	.	T	A	V	K	Y	T	Y	T	V	I	P	A	L	V	M
Query Conservation																						.																																												.
Alig confidence																						.																																												.
Template Conservation
Template Sequence		V	D	A	V	I	Y	A	E	F	A	V	A	T	G	L	I	A	M	G	A	V	L	G	R	L	R	V	F	Q	Y	A	L	L	A	L	F	I	V	P	V	Y	L	L	N	E	W	L	V	L	D	N	A	S	G	L	T	E	G	F	Q	D	S	A	G	S	I	A	I	H	A	F	G	A	Y	F	G	L	G	V	S
Template Known Secondary structure																							T	T	S	S																								T	T		T	T	S	S		T	T				T	T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	C	L	S	Y	I	E	R	W	V	D	S	I	T	P	A	V	T	K	N	F	L	K	P	M	L	I	V	L	I	A	A	P	L	A	I	L	L	I	G	P	I	G	I	W	I	G	S	A	I	S	A	L	V	Y	T	I	H	G	Y	L	G	W	L	S	V	A	I	M	G	A	L	W	P	L	L	V	M	T
Query Conservation
Alig confidence																				.	.	.	.	.																							.
Template Conservation																				.	.	.	.	.																							.
Template Sequence		I	A	L	T	T	A	A	Q	R	A	Q	P	I	E	S	D	A	T	.	.	.	.	.	S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	T	A	.	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K
Template Known Secondary structure											T	S								.	.	.	.	.																						T	.	T	S		G	G	G																											T	T
Template Predicted Secondary structure																				.	.	.	.	.																							.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		308				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		G	.	.	.	M	H	R	V	F	T	P	T	I	I	Q	T	I	A	E	T	G	K	E	G	M	V	M	P	S	E	I	G	A	N	L	S	L	G	G	S	S	L	A	V	A	W	K	T	K	N	P	E	L	R	Q	T	A	L	A	A	A	A	S	A	I	M	A	G	I	S	E	P	A	L	Y	G	V	A	I	R
Query Conservation			.	.	.
Alig confidence			.	.	.																																																					.	.	.	.	.	.	.	.	.		.							.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.		.							.	.	.	.	.	.	.
Template Sequence		G	K	A	S	I	V	D	M	A	N	A	A	L	A	G	G	V	A	I	G	S	V	C	N	I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	.	.	.	.	.	.	.	.	.	A	.	K	T	I	D	T	C	.	.	.	.	.	.	.
Template Known Secondary structure		T											T	T							T	T	T	T	T	T	S																						T									.	.	.	.	.	.	.	.	.	S	.					T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.		.							.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.										.		.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	P	L	I	A	S	L	I	S	G	F	I	C	G	A	V	A	G	M	A	G	L	A	S	H	S	M	A	A	P	G	L	F	T	S	V	Q	F	F	D	P	A	N	P	M	S	I	V	W	V	F	A	V	M	A	L	A	V	V	L	S	F	I	L	T	L	L	L	G	F	E	D	I	P	V	E	E	A
Query Conservation
Alig confidence		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q	A	Y
Template Known Secondary structure		.	.						T	T														S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T																													T	T				S	S	T	T
Template Predicted Secondary structure		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	A	R	K	Y	Q	S	V	Q	P	T	V	A	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	S	H	E	F	I	H	L	A	G	P	E	D	E	H	K
Template Known Secondary structure			G	G	G	T	S	S	S				G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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