Job Description P0AC13 Confidence 97.90% Date Thu Jan 5 11:16:53 GMT 2012 Rank 27 Aligned Residues 228 % Identity 17% Template c3t4cD_ PDB info PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria Resolution 1.95 Å

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		6	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	G	T	S	L	D	L	S	H	P	.	H	V	M	G	I	L	N	V	T	P	D	S	F	S	D	G	G	T	H	N	S	L	I	D	A	V	K	H	A	N	L	M	I	N	A	G	A	T	I	I	D	V	G	G	E	S	T	R	P	G	A	A	E	V	S	V	E	E	E	L	Q	R	V	I	P	V	V	E	A
Query Conservation												.
Alig confidence												.										.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		Y	D	F	E	V	G	L	D	Q	P	F	F	L	I	A	G	T	C	V	V	.	.	.	.	.	.	.	.	.	.	E	S	E	Q	M	T	I	D	T	A	G	R	L	K	E	I	C	A	K	L	.	.	.	.	.	.	.	N	V	P	F	I	Y	K	S	S	M	D	E	G	L	R	I	.	.	.	.	L	G	E
Template Known Secondary structure		T	T				S	T	T	S									S	S		.	.	.	.	.	.	.	.	.	.																				T	.	.	.	.	.	.	.	T																.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.											.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		I	A	Q	R	F	E	V	W	I	S	V	D	T	S	K	P	E	V	I	R	E	S	A	K	V	G	A	H	I	I	N	D	I	R	S	L	.	S	E	P	G	A	L	E	A	A	A	E	T	G	L	P	V	C	L	M	H	M	Q	G	N	P	K	T	M	Q	E	A	P	K	Y	D	D	V	F	A	E	V	N	R
Query Conservation																																						.
Alig confidence																											.											.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	R	Q	L	G	L	P	V	L	T	D	V	H	S	I	D	E	I	E	Q	V	A	S	V	.	V	D	V	L	Q	T	P	A	F	L	C	R	Q	T	D	F	I	H	A	C	A	R	S	G	K	P	V	N	I	K	.	.	.	.	.	.	.	.	.	.	.	.	K	G	Q	F	L	A	P	H	D	M	K	N
Template Known Secondary structure							T									S									T	T	.		S						G	G	G	T	T										T	T	S	S						.	.	.	.	.	.	.	.	.	.	.	.			T	T	S		G	G	G
Template Predicted Secondary structure																											.																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.													.	.	.	.	.	.	140	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																									.																															.	.
Query SS confidence																									.																															.	.
Query Sequence		Y	F	I	E	Q	I	A	R	C	E	Q	A	G	I	A	K	E	K	L	L	L	D	P	.	G	F	G	F	G	K	N	L	S	H	N	Y	S	L	L	A	R	L	A	E	F	H	H	F	N	L	P	L	L	V	.	.	G	M	S	R	K	S	M	I	G	Q	L	L	N	V	G	P	S	E	R	L	S	G	S	L
Query Conservation																									.																															.	.
Alig confidence																									.													.	.																	.	.					.	.	.	.	.	.	.	.
Template Conservation																																						.	.																							.	.	.	.	.	.	.	.
Template Sequence		V	I	D	K	A	R	E	A	A	R	E	A	G	L	S	E	D	R	F	M	A	C	E	R	G	V	S	F	G	Y	N	N	L	V	S	D	.	.	M	R	S	L	A	I	M	R	E	T	S	A	P	V	V	F	D	A	T	H	S	V	.	.	.	.	.	.	.	.	Q	L	P	G	Q	R	E	F	V	P	V	L
Template Known Secondary structure													T	T			S													S	S	S						.	.							G	G	G	G	S	S										T	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																						.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	C	A	V	I	A	A	M	Q	G	A	H	I	I	R	V	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	E	T	V	E	A	M	R	V	V	E	A	T	L	S	A	K	E
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	A	A	V	A	T	G	V	A	G	L	F	M	E	T	H	P	N	P	A	E	A	K	S	D	G	P	N	A	V	P	L	N	R	M	G	A	L	L	E	T	L	V	T	L	D	Q	A	V	K	R	H	P
Template Known Secondary structure											S								S		T	T	T			T	T	S		S				G	G	G																	S	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions