 |
Job Description | P0AC13 | Confidence | 69.42% | Date | Thu Jan 5 11:16:53 GMT 2012 |
Rank | 290 | Aligned Residues | 96 |
% Identity | 18% | Template | c3b4uB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
|
Resolution | 1.20 Å |
|
 |
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | V | M | G | I | L | N | V | T | P | D | S | F | S | D | G | G | T | H | N | S | L | I | D | A | V | K | H | A | N | L | M | I | N | A | G | A | T | I | I | D | V | G | G | E | S | T | R | P | G | A | A | E | V | S | V | E | E | E | L | Q | R | V | I | P | V | V | E | A | I | A | Q | R | F | E | V | W | I | S | V |
Query Conservation |   |
  |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |
|   |   |   |
|
|   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|
|   | . |
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|
|   |
|   |
|
|
|
| . | . |
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
Template Sequence |   |
Q | K | F | G | L | S | A | A | L | T | T | P | F | K | T | D | G | T | . |
V | D | I | D | A | M | I | A | H | A | R | R | C | L | S | N | G | C | D | S | V | T | L | F | G | T | T | G | . |
. |
E | G | C | S | V | G | S | R | E | R | Q | A | I | L | S | S | F | I | A | A | G | I | A | P | S | R | I | V | T | G | V |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
| B |
| T | T | S | S | . | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | S | S | T | T | T | . | . | T | G | G | G | S |
| T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . |
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | |
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
|
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
  |
  |   |
96 | . | . | . | 100 | . | . | |
|
|
|
. | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | T | S | K | P | E | V | . |
. |
. |
. |
I | R | E | S | A | K | V | G | A | H | I | I |
Query Conservation |   |
|
|   |   |   |   |
| . | . | . | . |   |   |
|
|
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|
Template Sequence |   |
L | V | D | S | I | E | D | A | A | D | Q | S | A | E | A | L | N | A | G | A | R | N | I |
Template Known Secondary structure |   |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|