Job Description P0AC13 Confidence 98.53% Date Thu Jan 5 11:16:53 GMT 2012 Rank 22 Aligned Residues 246 % Identity 18% Template c2y0fD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		K	L	F	A	Q	G	T	S	L	D	L	S	H	P	.	H	V	M	G	I	L	N	V	T	P	D	S	F	S	D	G	G	T	H	N	S	L	I	D	A	V	K	H	A	N	L	M	I	N	A	G	A	T	I	I	D	V	G	G	E	S	T	R	P	G	A	A	E	V	S	V	E	E	E	L	Q	R	V	I	P
Query Conservation																.
Alig confidence																.										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	Y	V	G	R	V	P	I	G	G	A	H	P	I	A	V	Q	S	M	T	N	T	P	.	.	.	.	.	.	.	.	.	T	R	D	V	E	A	T	T	A	Q	V	L	E	L	H	R	A	G	S	E	I	V	R	L	T	.	.	.	.	.	.	.	.	.	.	V	N	D	E	E	A	A	K	A	V	P	E
Template Known Secondary structure						T	T				S	T	T	S										S		.	.	.	.	.	.	.	.	.	T	T															T	T		S						.	.	.	.	.	.	.	.	.	.			S					T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.										.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.											.	60	.	.	.	.	.	.	.	.	.	70
		81	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure										.										.									.	.	.
Query SS confidence										.										.									.	.	.
Query Sequence		V	V	E	A	I	A	Q	R	.	F	E	V	W	I	S	V	D	T	.	S	K	P	E	V	I	R	E	.	.	.	S	A	K	V	G	A	H	I	I	N	D	I	R	S	L	S	E	P	G	A	L	E	A	A	A	E	T	G	L	P	V	C	L	M	H	M	Q	G	N	P	K	T	M	Q	E	A	P	K	Y	D
Query Conservation										.										.									.	.	.
Alig confidence										.										.									.	.	.										.																													.
Template Conservation																																									.																													.
Template Sequence		I	K	R	R	L	L	A	E	G	V	E	V	P	L	V	G	D	F	H	F	N	G	H	L	L	L	R	K	Y	P	K	M	A	E	A	L	D	K	F	.	R	I	N	P	E	H	F	A	E	M	I	R	I	A	M	D	L	G	K	P	V	R	I	G	A	N	W	G	.	S	L	D	P	A	L	L	T	E	L	M
Template Known Secondary structure									T	T										S	S																	S			.						T	T									T	T	T									G	G	.	G	S
Template Predicted Secondary structure																																									.																													.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.
		156															.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Query Sequence		D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	A	E	V	N	R	Y	F	I	E	Q	I	A	R	C	E	Q	A	G	I	A	K	E	K	L	L	L	D	P	G	F	G	F	G	K	N	L	S	H	N	Y	S	L	L	A	R	L	A	E	F	.	H	H	F	N	L	P	L	L	V	G	M	S	R
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.																		.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		D	R	N	A	S	R	P	E	P	K	S	A	H	E	V	V	L	E	A	L	V	E	S	A	V	R	A	Y	E	A	A	L	E	M	G	L	G	E	D	K	L	V	L	.	.	.	.	.	.	S	A	K	V	S	K	A	R	D	L	V	W	V	Y	R	E	L	A	R	R	T	Q	A	P	L	H	L	G	L	T	E
Template Known Secondary structure							S	S	S																														G	G	G				.	.	.	.	.	.				B	S	S																	S		B				B
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																							.	.	.				.	.	.	.	.
Query SS confidence																																							.	.	.				.	.	.	.	.
Query Sequence		K	S	M	I	G	Q	L	L	N	V	G	P	S	E	R	L	S	G	S	L	A	C	A	V	I	A	A	M	Q	G	A	H	I	I	R	V	H	.	.	.	D	V	K	.	.	.	.	.	E	T	V	E	A	M	R	V	V	E	A	T	L	S	A	K	E	N	K	R	Y
Query Conservation																																							.	.	.				.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																															.	.	.				.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	G	M	G	V	K	G	I	V	A	S	A	A	A	L	A	P	L	L	L	E	G	I	G	D	T	I	R	V	S	L	T	P	S	P	K	E	P	R	T	K	E	V	E	V	A	Q	E	I	L	Q	A	L	G	L	R	A	F	A	P	E	V
Template Known Secondary structure		.	.	.	.	.	.	.			S	S																		T			S									S	T	T			T	T												T	T	T	S	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions