Job Description P0AC13 Confidence 98.41% Date Thu Jan 5 11:16:53 GMT 2012 Rank 23 Aligned Residues 209 % Identity 16% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.											80	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	P	H	V	M	G	I	L	N	V	T	P	D	S	F	S	D	G	G	T	H	N	S	L	I	D	A	V	K	H	A	N	L	M	I	N	A	G	A	T	I	I	D	V	G	G	E	S	T	R	P	G	A	A	E	V	S	V	E	E	E	L	Q	R	V	I	.	.	.	.	.	.	.	.	.	.	P	V	V
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		R	E	K	A	L	V	S	Y	L	M	V	G	.	.	.	.	.	.	.	.	.	Y	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V	L	E	L	S
Template Known Secondary structure		T	B									T	T	.	.	.	.	.	.	.	.	.	S	S															T	T		S									S			T	T	S														T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure									.														.	.	.	.	.	.	.	.											.	.
Query SS confidence									.														.	.	.	.	.	.	.	.											.	.
Query Sequence		E	A	I	A	Q	R	F	.	E	V	W	I	S	V	D	T	S	K	P	E	V	.	.	.	.	.	.	.	.	I	R	E	S	A	K	V	G	A	H	.	.	I	I	N	D	I	R	S	L	S	E	P	G	A	L	E	A	A	A	E	T	G	L	P	V	C	L	M	H	M	Q	G	N	P	K	T	M	Q	E	A
Query Conservation									.														.	.	.	.	.	.	.	.											.	.
Alig confidence									.														.	.	.	.	.	.	.	.											.	.																																		.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	P	D	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T	.	.	.	.	.	.
Template Known Secondary structure									T	T	S																										T	T							T	T																T	T									T	T			.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.
Predicted Secondary structure																										.	.																																			.									.	.
Query SS confidence																										.	.																																			.									.	.
Query Sequence		P	K	Y	D	D	V	F	A	E	V	N	R	Y	F	I	E	Q	I	A	R	C	E	Q	A	.	.	G	I	A	K	E	K	L	L	L	D	P	G	F	G	F	G	K	N	L	S	H	N	Y	S	L	L	A	R	L	A	E	F	H	H	.	F	N	L	P	L	L	V	G	.	.	M	S	R	K	S	M	I	G	Q
Query Conservation																										.	.																																			.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.			.	.	.	.												.	.	.	.	.	.	.											.									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.												.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	R	I	K	L	I	C	E	A	A	D	E	M	.	.	.	.	T	Y	F	V	S	V	T	G	Y	E	R	.	.	.	.	.	.	.	I	K	K	K	V	E	E	Y	R	E	L	C	D	K	P	V	V	V	G	F	G	V	S	K	K	E	H	A	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S		.	.	.	.					S	S						.	.	.	.	.	.	.														S						S	S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
																160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	N	V	G	P	S	E	R	L	S	G	S	L	A	C	A	V	I	A	A	M	Q	G	A	H	I	I	R	V	H	D	V	K	E	T	V	E	A	M	R	V	V	E	A
Query Conservation
Alig confidence					.																			.	.	.	.	.	.	.	.	.
Template Conservation					.																			.	.	.	.	.	.	.	.	.
Template Sequence		I	G	S	.	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	.	.	.	.	.	.	.	.	.	K	I	E	D	L	G	N	L	V	K	E	L	K	E
Template Known Secondary structure				T	.	T	S	S														T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.										.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions