Job Description P60438 Confidence 100.00% Date Thu Jan 5 12:06:48 GMT 2012 Rank 10 Aligned Residues 205 % Identity 29% Template c4a1aB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein l3; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Resolution 3.52 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																			.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	G	L	V	G	K	K	V	G	M	T	R	I	F	T	E	D	G	V	.	.	.	.	.	.	.	.	.	.	S	I	P	V	T	V	I	E	V	E	A	N	R	V	T	Q	V	K	D	L	A	N	D	G	Y	R	A	I	Q	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	A	F	T	G	F	K	A	G	M	T	H	I	L	R	E	V	D	R	S	G	S	R	H	N	K	K	E	V	V	E	A	V	T	V	I	E	C	P	P	M	T	I	V	G	V	V	G	Y	I	D	T	P	R	G	L	R	A	L	T	T	V	W	A	K	T	I	D	N	N	T	K	K	R	F	Y	K	N	W
Template Known Secondary structure																						T	T	S	T	T	T	T	S																										T	T											S								G	G	G		S		S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																												.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Query Sequence		G	A	K	K	A	N	R	V	T	K	P	E	A	G	H	F	A	K	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	G	R	G	L	W	E	F	R	L	A	.	.	.	.	.	.	.	.	E	G	E	E	F	T	V	G	Q	S	I	S
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	S	N	K	K	A	F	T	H	H	E	K	N	F	D	Q	K	A	Q	D	L	L	L	K	R	I	E	K	Y	C	S	V	V	R	V	I	A	H	T	N	M	S	K	L	N	L	R	Q	K	K	N	H	I	L	E	I	Q	V	N	G	G	K	V	A	E	K	V	A	F	A	K	S	L	L	E	K	E	V	K
Template Known Secondary structure		T	T	S				T	T						T																		S										G	G	G	S		S	S														S													T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		98		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		V	.	E	L	F	A	D	V	K	K	V	D	V	T	G	T	S	K	G	K	G	F	A	G	T	V	K	R	W	N	F	R	T	Q	D	A	T	H	G	N	S	L	S	H	R	V	P	G	S	I	G	Q	N	Q	T	P	G	K	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T	V	Q	S	L	D
Query Conservation			.
Alig confidence			.																																					.	.													.
Template Conservation																																								.	.													.
Template Sequence		V	D	S	I	F	A	E	N	E	M	L	D	V	L	G	V	T	K	G	K	G	F	A	G	V	I	K	R	F	G	V	K	H	L	Q	K	K	T	.	.	H	R	G	Y	R	K	V	G	C	I	G	A	.	W	H	P	S	R	I	R	F	T	V	P	R	A	G	Q	L	G	Y	H	H	R	T	E	T	N	K	K
Template Known Secondary structure								T	T																												T	T		.	.	S	S		S	S	S		S		S			.	S	S	S	S	S			T	T	S							S
Template Predicted Secondary structure																																								.	.													.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.																															.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	R	V	D	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	L	L	L	V	K	G	A	V	P	G	A	T	G	S	D	L	I	V	K	P	A	V	K
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	R	V	G	K	G	D	D	A	S	N	A	S	T	A	G	D	V	T	D	K	A	I	T	P	L	G	G	F	P	H	Y	G	V	V	K	N	D	F	I	M	I	K	G	C	C	V	G	P	K	K	R	V	L	T	L	R	K	S	I	I
Template Known Secondary structure								T	T		S	S	T	T			T	T	T		S				S	S		T	T		B	T	T	T	B				S							S			S	S	S	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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