Job Description P60438 Confidence 100.00% Date Thu Jan 5 12:06:48 GMT 2012 Rank 6 Aligned Residues 205 % Identity 24% Template c3jywC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Resolution 8.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Query Sequence		M	I	G	L	V	G	K	K	V	G	M	T	R	I	F	T	E	D	G	V	.	.	.	.	.	.	.	.	.	.	S	I	P	V	T	V	I	E	V	E	A	N	R	V	T	Q	V	K	D	L	A	N	D	G	Y	R	A	I	Q	V	T	.	.	.	T	G	A	K	K	A	N	R	V	T	K	P	E	A	G	H
Query Conservation																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation
Template Sequence		L	T	S	F	L	G	Y	K	A	G	M	T	T	I	V	R	D	L	D	R	P	G	S	K	F	H	K	R	E	V	V	E	A	V	T	V	V	D	T	P	P	V	V	V	V	G	V	V	G	Y	V	E	T	P	R	G	L	R	S	L	T	T	V	W	A	E	H	L	S	D	E	V	K	R	R	F	Y	K	N	W
Template Known Secondary structure			S	B								B					B			S	S	T	T		T	T	T	T			B																					B			S	S	S	S			S						S	S			S	T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		68	.	70	.	.	.	.	.	.	.																																													.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query Sequence		F	A	K	A	G	V	E	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	W	E	F	R	L	A	.	.	.	.	.	.	.	.	E	G	E	E	F	T	V	G	Q	S
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	K	S	K	K	K	A	F	T	K	Y	S	A	K	Y	A	Q	D	G	A	G	I	E	R	E	L	A	R	I	K	K	Y	A	S	V	V	R	V	L	V	H	T	Q	I	R	K	T	P	L	A	Q	K	K	A	H	L	A	E	I	Q	L	N	G	G	S	I	S	E	K	V	D	W	A	R	E	H	F	E	K	T
Template Known Secondary structure		S	S	S					S			S			S		S		T	T								T	T	T	T	S		B												T	T	S	S					S											S	S	T	T					G	G	G	T	T	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		96	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		I	S	V	.	E	L	F	A	D	V	K	K	V	D	V	T	G	T	S	K	G	K	G	F	A	G	T	V	K	R	W	N	F	R	T	Q	D	A	T	H	G	N	S	L	S	H	R	V	P	G	S	I	G	Q	N	Q	T	P	G	K	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T	V	Q	S
Query Conservation					.
Alig confidence					.																																		.	.																.
Template Conservation																																							.	.																.
Template Sequence		V	A	V	D	S	V	F	E	Q	N	E	M	I	D	A	I	A	V	T	K	G	H	G	F	E	G	V	T	H	R	W	G	T	K	K	L	P	.	.	R	K	T	H	R	G	L	R	K	V	A	C	I	G	A	.	W	H	P	A	H	V	M	W	S	V	A	R	A	G	Q	R	G	Y	H	S	R	T	S	I	N
Template Known Secondary structure				S	T	T	T			T	T	S										B			S							T						S	.	.	S			S	S		S	S			S		S	S		.	S	S	S	S				T	T								B		S
Template Predicted Secondary structure																																							.	.																.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.																															.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	V	V	R	V	D	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	L	L	L	V	K	G	A	V	P	G	A	T	G	S	D	L	I	V	K	P	A	V	K
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	I	Y	R	V	G	K	G	D	D	E	A	N	G	A	T	S	F	D	R	T	K	K	T	I	T	P	M	G	G	F	V	H	Y	G	E	I	K	N	D	F	I	M	V	K	G	C	I	P	G	N	R	K	R	I	V	T	L	R	K	S	L	Y
Template Known Secondary structure									S	S	S							S	S		S	S		S		B	S	S	S	S	S			S	S	S					S						S	S			S			S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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