Job Description P60438 Confidence 100.00% Date Thu Jan 5 12:06:48 GMT 2012 Rank 9 Aligned Residues 205 % Identity 23% Template c3iz5C_ PDB info PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.															.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	G	L	V	G	K	K	V	G	M	T	R	I	F	T	E	D	G	V	.	.	.	.	.	.	.	.	.	.	S	I	P	V	T	V	I	E	V	E	A	N	R	V	T	Q	V	K	D	L	A	N	D	G	Y	R	A	I	Q	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	K	K
Query Conservation																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	A	F	L	G	Y	K	A	G	M	T	H	I	V	R	E	V	E	K	P	G	S	K	L	H	K	K	E	T	C	E	A	V	T	I	I	E	T	P	P	L	V	I	V	G	L	V	A	Y	V	K	T	P	R	G	L	R	T	L	N	S	V	W	A	Q	H	L	S	E	D	V	R	R	R	F	Y	K	N	W
Template Known Secondary structure		B	S																				S	S	S	S		S	S																										T	T											S			S	S					T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																																					.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Query Sequence		A	N	R	V	T	K	P	E	A	G	H	F	A	K	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	G	R	G	L	W	E	F	R	L	A	.	.	.	.	.	.	.	.	E	G	E	E	F	T	V
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	K	S	K	K	K	A	F	T	K	Y	A	L	K	Y	D	S	D	A	G	K	K	E	I	Q	L	Q	L	E	K	M	K	K	Y	A	T	I	V	R	V	I	A	H	T	Q	I	R	K	M	K	G	L	K	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	I	A	D	K	V	D	Y	G	Y	K	F	F
Template Known Secondary structure			S				S	S		S							S																			T											G	G	G		S	S	S												B			S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		93	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		G	Q	S	I	S	V	.	E	L	F	A	D	V	K	K	V	D	V	T	G	T	S	K	G	K	G	F	A	G	T	V	K	R	W	N	F	R	T	Q	D	A	T	H	G	N	S	L	S	H	R	V	P	G	S	I	G	Q	N	Q	T	P	G	K	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T
Query Conservation								.
Alig confidence								.																																					.	.													.
Template Conservation																																													.	.													.
Template Sequence		E	K	E	V	P	V	E	A	V	F	Q	K	D	E	M	V	D	I	I	G	V	T	K	G	K	G	Y	E	G	V	V	T	R	W	G	V	T	R	L	P	R	K	T	.	.	H	R	G	L	R	K	V	A	C	I	G	A	.	W	H	P	A	R	V	S	Y	T	V	A	R	A	G	Q	N	G	Y	H	H	R	T
Template Known Secondary structure		T	S		B		G	G	G	T			T	T																												S	S		.	.		S		S	S			S		S	S		.	S	S	S	S	S			T	T	S
Template Predicted Secondary structure																																													.	.													.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.																																.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	S	L	D	V	V	R	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	R	N	L	L	L	V	K	G	A	V	P	G	A	T	G	S	D	L	I	V	K	P	A	V	K
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	M	N	K	K	I	Y	K	M	G	K	S	G	Q	E	S	H	E	A	C	T	E	F	D	R	T	E	K	D	I	T	P	M	G	G	F	P	H	Y	G	V	V	K	G	D	Y	L	M	I	K	G	C	C	V	G	P	K	K	R	V	V	T	L	R	Q	S	L	L
Template Known Secondary structure													S	S	S	S				S		S	S	S	S						S	S		T	T		B	T	T	T	B				S							S			S	S	S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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